Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcacaaggaactgctttatgaatcaattccattcgattttgttgacctactaaatattaaattgtttctctgatttttctcatacgtgaaaaaacatgcag

Basic information

species Glycine max
transcript GLYMA20G29750.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208150357|gb|GD950290.1|GD950290
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCGTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCC-TTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|14125433|gb|BG789871.1|BG789871
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTAAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|11414051|gb|BF425991.1|BF425991
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|9564415|gb|BE473924.1|BE473924
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|15285826|gb|BI469717.1|BI469717
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTATTTCTTGTGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAATAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192316887|gb|FK006100.1|FK006100
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGGAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|19453458|gb|BM954868.1|BM954868
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|31308920|gb|CD394123.1|CD394123
EST:     TCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: TCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192316886|gb|FK006099.1|FK006099
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGGAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192307911|gb|FK003059.1|FK003059
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192316699|gb|FK006402.1|FK006402
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTGTAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|19346752|gb|BM891632.1|BM891632
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|31465485|gb|CD407513.1|CD407513
EST:     TCTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: TCTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|15000115|gb|BI320929.1|BI320929
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|209707846|gb|BW683742.1|BW683742
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTAAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192308823|gb|FK000143.1|FK000143
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|10238334|gb|BE807150.1|BE807150
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTTGAAG                         CTTTTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTG
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGG-TGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTG
EST: gi|17152905|gb|BM142838.1|BM142838
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|193425168|gb|FK389897.1|FK389897
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCT
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCT
EST: gi|208079231|gb|GD874943.1|GD874943
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTG
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTG
EST: gi|151397821|gb|EV267694.1|EV267694
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|192316700|gb|FK006403.1|FK006403
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTGTAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|207773501|gb|GD744541.1|GD744541
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|14125470|gb|BG789908.1|BG789908
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTAAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|298193346|gb|HO033780.1|HO033780
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|151396174|gb|EV266051.1|EV266051
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCCGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|208136682|gb|GD935008.1|GD935008
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
EST: gi|208236661|gb|GE032975.1|GE032975
EST:     CTTACTAGTCCGTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTG
genomic: CTTACTAGTCC-TTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTG
EST: gi|151412364|gb|EV282176.1|EV282176
EST:     CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAG                         CTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA
genomic: CTTCATCCAGTTCTTATTGTCATTGGCTTACTAGTCCTTGGGGGTGAAGgtaattcaca ... aaacatgcagCTATTATAAGCTACAAAGCATTACCCCTGAAGAAGGAAGTGAAGAAATTGA