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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATTTCCCTGAGCCTCAGCCAGCAGAGTATAATGACTTTGATCTTCCATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAGgtaacttcaactttcaaaatcattatatctatgtattgaacatataaagttgcacgaaccatataaaatcaatacagacaggttgtatacaaccttgtgg...

Basic information

species Glycine max
transcript GLYMA20G29670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153943|gb|BM143876.1|BM143876
EST:     CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAG                         GTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
genomic: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAGgtaacttcaa ... ccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
EST: gi|20812424|gb|BQ296902.1|BQ296902
EST:     CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAG                         GTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
genomic: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAGgtaacttcaa ... ccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA