Sequence
atgc intronic sequence ATGC exonic sequence...agacgagtaggagggtaaccattgttggttattaacattccttcaaaatggaggttgcacatgtagtttgtccaaagagttaatcatgtcccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAAACCAGGAATGTGCAAAGCCATTCGTGGCTGGAAAGAGTTAGAGTCCCTG
Basic information
species | Glycine max |
transcript | GLYMA20G29670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17153943|gb|BM143876.1|BM143876EST: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAG GTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
genomic: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAGgtaacttcaa ... ccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
EST:
gi|20812424|gb|BQ296902.1|BQ296902EST: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAG GTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
genomic: CATTTCAACTTGTACGTAAGTGATGAACAGTTGACATACACTGCTGAAAGgtaacttcaa ... ccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggaggttgcacatgtagtttgtccaaagagttaatcatgtcccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAAACCAGGAATGTGCAAAGCCATTCGTGGCTGGAAAGAGTTAGAGTCCCTG
agttaat putative branch site (score: 4)
tgtccctttt putative PPT
ttaatcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agacgagtaggagggtaaccattgttggttattaacattccttcaaaatggaggttgcacatgtagtttgtccaaagagttaatcatgtcccttttgcagGTGCCCACAGCTCAGGCGACTCGTTCTGCCAGCTTGGAACAGAATCAAGAAACCAGGAATGTGCAAAGCCATTCGTGGCTGGAAAGAGTTAGAGTCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -ggagggt
- - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - - - -atggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc