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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCTGACCAAAGTCTTTTCCAGgtaattcagaattttttacatgctctggttgttgattaaattctcctgtcctgacgctgcattattgatcaatcatgaacttgagttgttcatcatgctc...

Basic information

species Glycine max
transcript GLYMA20G29270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 6
TGCTGGTGTTAAAGTTAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATTATCTATAGCTTAGCTTCTGACCAAAGTCTTTTCCAGgtaattcagaattttttacatgctctggttg--ttgattaaattctcctgt-cctgacgctgcattattgatcaatcatgaacttgagttgttcatcatgctc-
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||  ||   |   ||||||| |||  || ||| |  ||||||   |   |||| ||| | |   ||  ||  || |||   || ||   |   | ||  | |    || ||  ||  | |  ||  |||||  |  |   || 
TGCTGGTATTAAAGTTAAAGCTGTTGACACAACTGGTGCTGGTGATGCATTTGTAAGTGGGATCCTCAGCAATATAGCTTCAGACATAAATCTCTATCAGgta--cccttatttcttatacgaattgaatggtttcatttggttatctcttgtttcacatttctcatttcatatatttttatatt--gttgtagaaaaatgtcg