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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCGTATGATCCAAATTTGAGATTGGCACTATGGCCATCTGCTGAGGCTGCTCGGGATGGCATAATGAGTATATGGGATCAAGCCGATGTCATAAAGgtatattatacgtggcttggagatttttatatgatctactttataaattccaattcacatttaattgttttttttccctcttgttttatgttgaaaatcagcattctgttagtaaacctgatgtggtattttttttttatgtttgtgcag

Basic information

species Glycine max
transcript GLYMA20G29270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29270.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv16s0022g02340.t01 (Vitis vinifera), 5'ss of exon 4
TCTTTCGTATGATCCAAATTTGAGATTGGCACTATGGCCATCTGCTGAGGCTGCTCGGGATGGCATAATGAGTATATGGGATCAAGCCGATGTCATAAAGgtatatt------atacgtggcttgg---agatttttatatgatctactt-tataaattccaat-tcacatttaattgttttttttccctcttgttttatgttgaaaatcagcat---tctgtta-------gtaaacctgatgtggtattttttttttatgtttgtgcag
 |||||||||||||| ||| | ||||||  |||||||||||| || ||||||||| || | || ||||||||| |||||||  |||| ||| |||| |||||||  |      || |   | || |   || || | |  | || | ||| |   | | | ||| | | || |  ||  || | |     | ||   || |   | ||  || ||   ||| | |        || |||||||   |||||  ||| | |  |||  |   
CCTTTCGTATGATCCGAATCTTAGATTGAAACTATGGCCATCAGCAGAGGCTGCTAGGAAGGGAATAATGAGTGTATGGGACAAAGCAGATATCATTAAGgtatggttttgaaatgctgagattagctgaggttctgaatttatttgcttctgctactgctaatataatatcttttttattatatattagcatgacataaggatagaaatagaatggctctatgactatattatagacctgatcatgtattcctttatgaactttcag---