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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagtcctgcagggattctagtcttgccattatgttatattttcccttcaattattgatgaaatgggttctctacagGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCGATGTCATTCCATCACTTCGTTGTTCTGCGTAACTTTGTGGACTGGAAA

Basic information

species Glycine max
transcript GLYMA20G29120.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8401839|gb|BE057473.1|BE057473
EST:     GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAG                         GTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAAT
genomic: GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGgtacgtagtc ... ttctctacagGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAAT
EST: gi|192331506|gb|FK023411.1|FK023411
EST:     GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAG                         GTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCC
genomic: GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGgtacgtagtc ... ttctctacagGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCC
EST: gi|15203942|gb|BI426719.1|BI426719
EST:     GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAG                         GTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCC
genomic: GTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGgtacgtagtc ... ttctctacagGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgccattatgttatattttcccttcaattattgatgaaatgggttctctacagGTTGACAATTCCGGCAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCGATGTCATTCCATCACTTCGTTGTTCTGCGTAACTTTGTGGACTGGAAA
                              tattgat  putative branch site (score: 3)
                                             ttctctac  putative PPT
      attatgttatatttt  TA-rich tract