1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacccaatttatcaattaatttcttctttttcatttgcttctattgtgtgttctaataattattagggttattggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTA
species | Glycine max |
transcript | GLYMA20G29120.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATEST: gi|8401839|gb|BE057473.1|BE057473
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATEST: gi|192331506|gb|FK023411.1|FK023411
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATEST: gi|151408646|gb|EV278454.1|EV278454
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAGTTACATAAATEST: gi|14990008|gb|BI315681.1|BI315681
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATEST: gi|18732766|gb|BM527236.1|BM527236
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
tttcatttgcttctattgtgtgttctaataattattagggttattggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTA
ttctaat putative branch site (score: 2)
tgttctaataattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacccaatttatcaattaatttcttctttttcatttgcttctattgtgtgttctaataattattagggttattggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG