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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAGATGGTTCATAGAGAGATTGAAAAGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaatttatcaattaatttcttctttttcatttgcttctattgtgtgttctaataattattagggttattggggtttcag

Basic information

species Glycine max
transcript GLYMA20G29120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925441|gb|AW831467.1|AW831467
EST:     CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG                         GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: gi|8401839|gb|BE057473.1|BE057473
EST:     CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG                         GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: gi|151408646|gb|EV278454.1|EV278454
EST:     CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG                         GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAGTTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: gi|14990008|gb|BI315681.1|BI315681
EST:     CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG                         GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST: gi|18732766|gb|BM527236.1|BM527236
EST:     CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG                         GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT