Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7925441|gb|AW831467.1|AW831467EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST:
gi|8401839|gb|BE057473.1|BE057473EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST:
gi|151408646|gb|EV278454.1|EV278454EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAGTTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST:
gi|14990008|gb|BI315681.1|BI315681EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
EST:
gi|18732766|gb|BM527236.1|BM527236EST: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAG GGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
genomic: CTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTGACTTCATCAAGgtaaacccaa ... ggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcatttgcttctattgtgtgttctaataattattagggttattggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTA
ttctaat putative branch site (score: 2)
tgttctaataattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacccaatttatcaattaatttcttctttttcatttgcttctattgtgtgttctaataattattagggttattggggtttcagGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAATTGAGTGACAAGAGGGATAAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG