Sequence
atgc intronic sequence ATGC exonic sequencegtgagctattacctgaagtttggtttagttattgacttatgaactgttactttaaactttgatatccttatggactgatgtattttgtttttcacaatttattttaattatagtgtgtgccacccttgtggtttcttactgtctcttaattgtgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
Basic information
species | Glycine max |
transcript | GLYMA20G29060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G164956_T02 (Zea mays), 3'ss of exon 7
gtgagctattacctgaagtttggtttagttattgacttatgaactgttactttaaactttgatatccttatggactgatgtattttgtttttcacaatttattttaattatagtgtgtgccacccttgtggtttcttactgtctcttaattgtgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
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----------------------------------------------------------------ctctatttaaattttgtttgttataatccttttcccattcacattatagaagttgcaacttacaaggt-----gcagatatttgatgtgtttttggatcatttagGTCATTCTTGCTGGATTTCGTAGCGGGAAGTTCCAGGTTTTGGTTGCTACAAATGTGGCGGCTCGTGGTCTGGATATTAATGATGTGCAGCTTATCATTC
upper sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G62190.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgagctattacctgaagtttggtttagttattgacttatgaactgttactttaaactttgatatccttatggactgatgtattttgtttttcacaatttattttaattatagtgtgtgccacccttgtggtttcttactgtctcttaattgtgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
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-------------------------------gtatgtgtttaagttttctttcaagctttcttgcataggcaaagttaagtagggagaatttgat--cttcttatcctgttaaattgctcaaacagagcagtatcagcttgctaacta--tgagtcctgtgat-tatagGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCC
upper sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 7
gtgagctattacctgaagtttggtttagttattgacttatgaactgttactttaaactttgatatccttatggactgatgtattttgtttttcacaatttattttaattatagtgtgtgccacccttgtggtttcttactgtctcttaattg--tgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
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----------------------------------------------------------------tttgtatgagccccaggaa---atttgtcatatttccttctaatgaactcgagcttaatatttgttgtat----gagtctcttgatggattcttctttttattgtagGTCACGCTTTCTGGATTTAGGTCTGGCAAATTCATGACATTAGTGGCCACAAATGTAGCGGCAAGAGGATTGGACATTAATGATGTGCAGTTAATCATCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254314573|gb|GR829566.1|GR829566EST: TGACTGGAGCAAAAGCTCTCCATGGTGACATACAGCAATCAACACGTGAG GTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACA
genomic: TGACTGGAGCAAAAGCTCTCCATGGTGACATACAGCAATCAACACGTGAGgtgagctatt ... tcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtgccacccttgtggtttcttactgtctcttaattgtgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
tcctgtcccct CT-rich tract
tcttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagctattacctgaagtttggtttagttattgacttatgaactgttactttaaactttgatatccttatggactgatgtattttgtttttcacaatttattttaattatagtgtgtgccacccttgtggtttcttactgtctcttaattgtgtcctgtcccctgcagGTTACACTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATAC
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