1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgcttgttacttgctaactgtgtcatctgtttgatgctgtcttttgctgttaacatacttcataaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT
species | Glycine max |
transcript | GLYMA20G29060.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAG TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGEST: gi|208174867|gb|GD970368.1|GD970368
genomic: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGgtatgcttgt ... taaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
EST: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAG TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGEST: gi|254314573|gb|GR829566.1|GR829566
genomic: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGgtatgcttgt ... taaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
EST: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAG TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGEST: gi|207778095|gb|GD747132.1|GD747132
genomic: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGgtatgcttgt ... taaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
EST: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAG TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGEST: gi|207816193|gb|GD786628.1|GD786628
genomic: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGgtatgcttgt ... taaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
EST: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAG TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
genomic: AAAGCCGTTAGTGGGGAAGCTGCTGAAATGATTATCCAAGTGTCTGATAGgtatgcttgt ... taaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGG
ctgtgtcatctgtttgatgctgtcttttgctgttaacatacttcataaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT
tgttaac putative branch site (score: 2)
atacttcataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttgttacttgctaactgtgtcatctgtttgatgctgtcttttgctgttaacatacttcataaaatgtagTGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGATCTTTTGAACAATTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT