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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattt...

Basic information

species Glycine max
transcript GLYMA20G28980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14680.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttga-gaaaatattttt---tattttcattttatgttttaacttctaattactaaaatgtcaccttattt
|||||||| || || ||||| || || || ||||| |||||||| || |||||| ||||||||||| ||||||| || ||||| |||||  ||  |  ||    | | |||   |||| |  | | | || ||   |    | | |||| ||| || |  ||  | | ||   |    ||  |        
GTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGgtaaataaacacttctcaaaccaa---ttgggacataatgtaactaagctcaagtgtattcaatttctgatcaaagatttgatggttgttttgatag-------

upper sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G22890.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattt
|||||||||||||||||||| || || || ||||| ||||| || || || |||||||| || ||| ||||||| || ||||| |||||               ||| ||  |||   |  |||  |||||  ||  || |||  || ||      ||| ||||| |  |      | |   ||   
GTTGCTGCATATGACAAGACGCAAGGCAAGATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGgta------------atataccagtcct---acattgttaaaattcttcatagtttgtttata-aaacaaacctctaaatgtttttcgattattctag--

upper sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G43780.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcat--tttatgttttaacttctaattactaaaatgtcaccttattt
|| |||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |||| |||||||| ||||||||||| || |||||  |   | ||    |||  |  | ||   ||| |||       ||| ||| | |  |   | |     ||||||     |   |   | |    || |  
GTCGCTGCATATGACAAAACTCAGGGGAAAATGGCCTTCTTTGATCCTTCCAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGgtaaa---accc----aattccggagctccaaatctga-------tttcttactctagtgactaagaaaataactt--ggatcggatggttttgttttgtag

upper sequence: GLYMA20G28980.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04210.t01 (Vitis vinifera), 5'ss of exon 4
GTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttatcctctgaataacaaaccttggaatttgagaaaatattttttattttcattttatgttttaacttctaattactaaaatgtcaccttattt------------------------------------------------------------------------
|||||||||||||| || ||||||  |||||||||||||||||| || |||||| |||| |||||||| |||||||| |||||||||||  ||||    | || |||  |||      ||  ||   |  | ||||||  |||||| |    |  |||   | || |     ||  | |       |                                                                        
GTTGCTGCATATGATAAAACTCAGAATAAAATGGCATTCTTTGATCCCTCAAGGGCTCAAGACTTCCTCTTCATATCTGGCACAAAGgtatattt----tttgcataggaaa------aaaatgcagacctctttttttatttcatatctaatgataatcccaaaatggctgaaaattattcagactgggcatgcatttttttcaacatggaaatatttgatggatgatgtttctgaacaaggccgctacattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425279|gb|CA936799.1|CA936799
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGTCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|254330106|gb|GR839659.1|GR839659
EST:     TCTTTGACCCTTCAAGGCCTCAG-ACTTCCTGTTCATATCAG-CACAA-G                         ATGCGCACACTGGCAAGGAACAA-GAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|15664848|gb|BI702219.1|BI702219
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGTCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|6566778|gb|AW234410.1|AW234410
EST:     CTNTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACANAA-                         ATGCGCACACTGGCAANGAACANAGAAAGCCCTNCTGATGGANTTATGTG
genomic: CTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACA-AAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTG
EST: gi|17518832|gb|BM187874.1|BM187874
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGTCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|17023944|gb|BM094978.1|BM094978
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|254327391|gb|GR837000.1|GR837000
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|7028493|gb|AW458276.1|AW458276
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|10238763|gb|BE807651.1|BE807651
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|4396152|gb|AI495149.1|AI495149
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGTCCTCCTGATGGATT-ATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|14990878|gb|BI316551.1|BI316551
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|17023870|gb|BM094904.1|BM094904
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|254327390|gb|GR836999.1|GR836999
EST:     TCTTTGACCCTTCAAGGCCTCAG-ACTTCCTGTTCATATCAG-CACAAAG                         ATGCGCACACTGGCAAGGAACAA-GAA-GCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
EST: gi|193661169|gb|FK600891.1|FK600891
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAAACAAAGAAAGTCCTCCTGATGGATTTATGTG
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAA-CAAAGAAAGCCCTCCTGATGGATTTATGTG
EST: gi|23064610|gb|BU579383.1|BU579383
EST:     TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAG                         ATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC
genomic: TCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGgtgcatttat ... cattttacagATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGC