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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGAATCTGTTACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggttttcttttttattagctggctctgtttcagttaggaaaactttatctagtagtcatgatattatatctgcatttgtagaatttatatggag...

Basic information

species Glycine max
transcript GLYMA20G28900.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323666|gb|GR840307.1|GR840307
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
EST: gi|193704974|gb|FK641846.1|FK641846
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
EST: gi|192309043|gb|FK001819.1|FK001819
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGGTGGGAGAGTAC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTG-TGGGAGAGTAC
EST: gi|15337162|gb|BI497818.1|BI497818
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
EST: gi|7042157|gb|AW472051.1|AW472051
EST:     TACAGCTGAACAGAAGTACTTGANAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACNGAAGCTGTGT-GTATTCTACACTGTGGGAGAGTAC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGC-GTGTTGTATTCTACACTGTGGGAGAGTAC
EST: gi|151393248|gb|EV263123.1|EV263123
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
EST: gi|7285421|gb|AW597908.1|AW597908
EST:     TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATA                         CTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC
genomic: TACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggtt ... ctgtttgtagCTAATGAGAGCACACGGAAGCGTGTTGTATTCTACACTGTGGGAGAGTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGAATCTGTTACAGCTGAACAGAAGTACTTGAAAGCCCGTGATGCAAGGCATCGTCATAgtaagtggttttcttttttattagctggctctgtttcagttaggaaaactttatctagtagtcatgatattatatctgcatttgtagaatttatatggag

- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT