1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TATAAATTTTGTTTTCATAACCCTTACTCAACACCTGAGACTGTTTCTTTCTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctgtgtaagctgcttttcttactagattctactatcctagtgcatgacatttatgaagaatggtccaagtgttgtgttcctttttcattctattttttggatttcaaggctcccctttaacttttatggtttgcag
species | Glycine max |
transcript | GLYMA20G28900.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG GEST: gi|254323666|gb|GR840307.1|GR840307
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcag-
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG GEST: gi|254323666|gb|GR840307.1|GR840307
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcag-
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG GEST: gi|192309043|gb|FK001819.1|FK001819
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcag-
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|7041818|gb|AW471712.1|AW471712
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: CTACATTCATGTTGGTCACATCCTCTCTGAGCATGATCTTGCCAAAGATG AGCATGTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|15337162|gb|BI497818.1|BI497818
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|7042157|gb|AW472051.1|AW472051
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAGEST: gi|151393248|gb|EV263123.1|EV263123
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
EST: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATG AGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
genomic: CTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctg ... tggtttgcagAGCATTTGGACCCAATTAATGTTAAGATCGCTGAGCTCAGAGAGGCACTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAAATTTTGTTTTCATAACCCTTACTCAACACCTGAGACTGTTTCTTTCTACATTCATGTTGGTCACATCCCCTCTGAGCATGATCTTGCCAAAGATGgtaagttctgtgtaagctgcttttcttactagattctactatcctagtgcatgacatttatgaagaatggtccaagtgttgtgttcctttttcattctattttttggatttcaaggctcccctttaacttttatggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG