Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttaattatgtctaacattgtgcactacttatgcatctttgacattctggctatgcttatatttttaataattcaacccgagtcaccttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT

Basic information

species Glycine max
transcript GLYMA20G28860.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28860.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14710.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------------------------------------aattttaattatgtctaacattgtgcactactta-tgcatctttgacattctggctatgctta------tatttttaataattcaacccgagtc-----------accttttc----tgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT
                                                                   ||||| | |  | ||||| | | | ||||| | || || |  || | |  |   ||| ||       | ||||   |  || |  |   ||            |  | |||    |||||||  |||||||||| ||||| |||||| | ||||| ||||||  |||| | || ||||| || ||||| ||| | ||||||||||| |||||||| |  |
gtttgtttatatagacttgaatgctagatgtttacttttgaacaagtcttgttttaactctctagggttttactcaattgtaacact-tactctactgaatgtatttaggaaaattcgttgatgatttgcaaattgttttatgtgcttgagtcttggtttgatgatggaaaagtgttcaaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATCCGTTACT

upper sequence: GLYMA20G28860.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14716.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------aattttaatt----atgtctaacattgtgcactacttatgcatctttgacattctggctatgcttatatttttaataattcaacccgagt-caccttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT
                                  | || |||     |||| ||   |||| ||   |||||     ||| ||  ||| |   |  |   | | ||  |      |    |            |||||||  |||||||||| ||||| |||||| | ||||| ||||||  |||| | || ||||| || ||||| ||| | |||||||||||||||||||| |  |
gtttgtggtctttatttatttactatcccactagacttgaatggtagatgtttatttttgtccaagtcttat-----tttaactctctaggggttttctcaatcttggtttgatgattaaaaagtgttcaaaatgcagGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTACACACTGATGAGGAGATCCGTTACT

upper sequence: GLYMA20G28860.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g04080.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------aatt-ttaattatgtctaacattgtgcactacttatgcatctttgacattctggctatgcttatatttttaataattcaacccgagtc---accttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT
                                       |||| ||    |  |||  || | ||  |     ||  ||     |   | | | || |  | |||  |  |||| |  |   |  |    || |||||| |||||| |||||||||| |||||||||||  |||||||||||||| |||| ||||| | ||| |||||||||||||||||||||||||||||||| ||||  |
gtttgtcacctaacttacttttttcattcagaaaaaggaaattgttctccaattctttcagtttgtgccttgaatttataccatagcctatagttaagtctgtataat--ataagtggaaatggatgtaaacattttctccagGATTTTTGTGAGGTTTGCCCAGAAAAACTGCCAAATTATGAAGAGAAGATCAAGAACTTTTTTGAAGAGCATCTTCACACTGATGAGGAGATTCGCTACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283499|gb|AW596106.1|AW596106
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298198321|gb|HO039860.1|HO039860
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|13477757|gb|BG507506.1|BG507506
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298179497|gb|HO027968.1|HO027968
EST:     ATGATCCAGAGCTAAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|37994412|gb|CF806158.1|CF806158
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298196159|gb|HO044550.1|HO044550
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193565451|gb|FK527244.1|FK527244
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|151396296|gb|EV266173.1|EV266173
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193470005|gb|FK436786.1|FK436786
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAA
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAA
EST: gi|209728724|gb|BW655417.1|BW655417
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193608303|gb|FK555284.1|FK555284
EST:     AGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: AGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298189869|gb|HO038272.1|HO038272
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|13252127|gb|BG363030.1|BG363030
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193572267|gb|FK530012.1|FK530012
EST:     TAGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: T-GATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298184335|gb|HO029548.1|HO029548
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298170432|gb|HO019056.1|HO019056
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209706869|gb|BW683209.1|BW683209
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|19053712|gb|BM732379.1|BM732379
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAGATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193566133|gb|FK524608.1|FK524608
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298182107|gb|HO026282.1|HO026282
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GGTGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298184623|gb|HO029836.1|HO029836
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|12689395|gb|BG155792.1|BG155792
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAATTGCCAA-TTATGAACAGAAAAAT
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAA-T
EST: gi|298189141|gb|HO037544.1|HO037544
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|209706331|gb|BW680691.1|BW680691
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|6719759|gb|AW307406.1|AW307406
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|213601717|gb|DB972425.1|DB972425
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|7233975|gb|AW569317.1|AW569317
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|11413256|gb|BF425267.1|BF425267
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAAAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|254326218|gb|GR840810.1|GR840810
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298181742|gb|HO025917.1|HO025917
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|21479899|gb|BQ576582.1|BQ576582
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|207758686|gb|GD728732.1|GD728732
EST:     GATCCAGAGCTGAAGAAGATTCGTGAAAGAAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTG
genomic: GATCCAGAGCTGAAGAAGATTCGTGAA-GA-GCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTG
EST: gi|7925120|gb|AW831146.1|AW831146
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|4295457|gb|AI442336.1|AI442336
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|11413845|gb|BF425856.1|BF425856
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|15813927|gb|BI786202.1|BI786202
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|10238192|gb|BE807080.1|BE807080
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|207705544|gb|GD689438.1|GD689438
EST:     ATGATCCAGAGCTGAAAAAGATTCGTGAAGAGCGTGGCTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTT
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTT
EST: gi|193570260|gb|FK525331.1|FK525331
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|193701216|gb|FK638661.1|FK638661
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|208168596|gb|GD968698.1|GD968698
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|298175141|gb|HO014944.1|HO014944
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGTCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
EST: gi|8827270|gb|BE211000.1|BE211000
EST:     ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG                         GATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC
genomic: ATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATGgtttgttata ... ttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctggctatgcttatatttttaataattcaacccgagtcaccttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT
                    ttttaat  putative branch site (score: 3)
                                        tcaccttttct  putative PPT
         tatgcttatattttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aattttaattatgtctaacattgtgcactacttatgcatctttgacattctggctatgcttatatttttaataattcaacccgagtcaccttttctgcagGATGTTTGTGAGGTCTGCCCAGAAAAGTTGCCAAATTATGAACAGAAAATCAAAAGCTTCTTTGAAGAGCATCTTCACACTGATGAGGAGATCCGCTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC