1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcttcttgttgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG
species | Glycine max |
transcript | GLYMA20G28860.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298198321|gb|HO039860.1|HO039860
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|13477757|gb|BG507506.1|BG507506
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298179497|gb|HO027968.1|HO027968
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|37994412|gb|CF806158.1|CF806158
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298196159|gb|HO044550.1|HO044550
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|151396296|gb|EV266173.1|EV266173
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|193470005|gb|FK436786.1|FK436786
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|209728724|gb|BW655417.1|BW655417
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298189869|gb|HO038272.1|HO038272
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|13252127|gb|BG363030.1|BG363030
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|37995644|gb|CF807233.1|CF807233
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298184335|gb|HO029548.1|HO029548
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298170432|gb|HO019056.1|HO019056
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCACCACAAAGAACCCAAGTGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|209706869|gb|BW683209.1|BW683209
genomic: CCCCACCACAAAGAACCCAAG-GAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|19053712|gb|BM732379.1|BM732379
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|193566133|gb|FK524608.1|FK524608
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: GTTGGACCAACTTGCTG AACTTGGAG-CCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298182107|gb|HO026282.1|HO026282
genomic: GTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298184623|gb|HO029836.1|HO029836
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|12689395|gb|BG155792.1|BG155792
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298189141|gb|HO037544.1|HO037544
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|209706331|gb|BW680691.1|BW680691
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|6719759|gb|AW307406.1|AW307406
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|213601717|gb|DB972425.1|DB972425
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|7233975|gb|AW569317.1|AW569317
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|11413256|gb|BF425267.1|BF425267
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|254326218|gb|GR840810.1|GR840810
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298181742|gb|HO025917.1|HO025917
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|21479899|gb|BQ576582.1|BQ576582
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGATACTAGATGCTGATAACCATGAAAATGATCEST: gi|207758686|gb|GD728732.1|GD728732
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|7925120|gb|AW831146.1|AW831146
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|4295457|gb|AI442336.1|AI442336
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|11413845|gb|BF425856.1|BF425856
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|15813927|gb|BI786202.1|BI786202
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|10238192|gb|BE807080.1|BE807080
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|207705544|gb|GD689438.1|GD689438
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAATTAGATGCTGATAACCATGAAAATGATCEST: gi|193570260|gb|FK525331.1|FK525331
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|193701216|gb|FK638661.1|FK638661
genomic: CGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|298175141|gb|HO014944.1|HO014944
genomic: CGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|8827270|gb|BE211000.1|BE211000
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCEST: gi|193334758|gb|FK300578.1|FK300578
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATC
EST: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTG AACTTGGAGTCCTTAGCTGGAAACTAGATG
genomic: CCCCCACCACAAAGAACCCAAGGAGTTTGTCTCGTTGGACCAACTTGCTGgtaagcttct ... taaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATG
tgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG
ttaaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcttgttgcatttatcggttatatttatgtgcagattaagggttttacgctaacatatgatctttgacacgtgttaaattgtagAACTTGGAGTCCTTAGCTGGAAACTAGATGCTGATAACCATGAAAATGATCCAGAGCTGAAGAAGATTCGTGAAGAGCGTGGTTACACCTACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA