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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATCACCATCACTTCCATTGGTTGCAAATCTTCACCACCTTCACTTTTCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCAgtaagtacacacttccacacaacacacggaatttttattttttttaaataaaaaccaccccacttcttttatcaacaacacacgcacgctataatcctaactttccaaagaacttactatttttttttcag

Basic information

species Glycine max
transcript GLYMA20G28830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20207742|gb|BQ133831.1|BQ133831
EST:     TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCA                         GTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
genomic: TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCAgtaagtacac ... tttttttcagGTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
EST: gi|20207615|gb|BQ133704.1|BQ133704
EST:     TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCA                         GTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
genomic: TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCAgtaagtacac ... tttttttcagGTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
EST: gi|17963634|gb|BM270381.1|BM270381
EST:     TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCA                         GTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
genomic: TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCAgtaagtacac ... tttttttcagGTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
EST: gi|20075588|gb|BQ094371.1|BQ094371
EST:     TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCA                         GTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA
genomic: TCTCTTCTTCTCTTCCACTTCAGCCATTACCACTCTCACCCCACATCCCAgtaagtacac ... tttttttcagGTGGTGGGGCAGTGAAGCAGCTTAACCGGGAAGAGAAACAAAATGGGTCAA