1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggaaaaaaatgtaatagaaaattaccttagtttagtatttaatttttgaacaggcaacaactgttcatttcatgaaactcattttgcttaacgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG
species | Glycine max |
transcript | GLYMA20G28720.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|9820255|gb|BE555765.1|BE555765
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|254317897|gb|GR832065.1|GR832065
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAEST: gi|6725409|gb|AW309808.1|AW309808
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAA
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAGCAGCATCTEST: gi|298182333|gb|HO026508.1|HO026508
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCGGGAGCAAACATAATATTAACAGCATCTEST: gi|254342671|gb|GR858833.1|GR858833
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|192323593|gb|FK017114.1|FK017114
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|298194471|gb|HO042943.1|HO042943
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTATCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|192306172|gb|FG996814.1|FG996814
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|298182746|gb|HO031481.1|HO031481
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|9986799|gb|BE660907.1|BE660907
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTEST: gi|23727891|gb|BU761981.1|BU761981
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
EST: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGG GTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
genomic: AACTCTGGAGTGCCAAATGCCTTATTAGCTCCCCACATCTTGTCCGAAGGgtactttttc ... acgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCT
ttgaacaggcaacaactgttcatttcatgaaactcattttgcttaacgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG
gcttaac putative branch site (score: 3)
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaaaaaatgtaatagaaaattaccttagtttagtatttaatttttgaacaggcaacaactgttcatttcatgaaactcattttgcttaacgtggacagGTTCACCTAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA