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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattgtatatttcagttatgttttaatatttttaatttgagatgactgttctaagtattcttctgttgtttttaacctcttttgtcagGTTTTCCTTGTTACTGGACTAAACCGTAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAG

Basic information

species Glycine max
transcript GLYMA20G28510.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G469469_T01 (Zea mays), 3'ss of exon 7
gttaattgtatatttcagttatgttttaatatttttaatttgagatgactgttctaagtattcttctgttgt-ttttaacctcttttgtcagGTTTTCCTTGTTACTGGACTAAACCGTAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAG
            |     |||| ||   || || || |||     ||    |  |   ||| |||    | |  |  | | | | |  | ||||  | ||||| ||||| ||||| || |||||||| |||||||| ||||||||| | |||||||||||||||||  |||| ||  |  |||||
-----------gtgctctttatatt---attttcttgattgttactgcaattcttttctatcctttaaatatactgcatcgtatatatttagGTGCTTCTTGTAACTGGGCTAAATCGGAAGTTTGGGATTAGTGACGAGTGGTTTTCTATTGGTGATTCATTAATCATCACAGTCCTTGGTCAG

upper sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G162983_T01 (Zea mays), 3'ss of exon 1
gttaattgtatatttcagttatgttttaatatttttaatttgagatgactgttctaag-tattcttctgttgt-ttttaacctcttttgtcagGTTTTCCTTGTTACTGGACTAAACCGTAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAG
            |     |||| ||   || || || ||| |  |  ||  ||||    ||| |||      | ||  | | | | |  | ||||  | ||||| |||||| |||| || |||||||| ||||| || ||||||||| | |||||||||||||||||  |||| ||  |  |||||
-----------gtgctctttatatt---attttcttgatt-gttactacaattcttttctatcctttaaacatattgcatcgtatatatttagGTGCTTCTTGTAACTGGATTAAATCGGAAGTTTGGGATTAGCGACGAGTGGTTTTCTATTGGTGATTCATTAATCATCACAGTCCTTGGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgagatgactgttctaagtattcttctgttgtttttaacctcttttgtcagGTTTTCCTTGTTACTGGACTAAACCGTAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAG
                                    ttttaac  putative branch site (score: 2)
                                   tttttaacctctttt  CT-rich tract
                                ttgtttttaa  TA-rich tract