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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTGTGATTTCTGGTTTTTCTGCATTGCCGTGGCTTGTCAAACCTCTTTACGGGTTTATTAGgtgagtctaaaactgcatcactttttcctcttcctgaaatgagtggttcattatttttctcaattttgtcaatcctggggaccacattttcattattgaacttaataatatggcatgcag

Basic information

species Glycine max
transcript GLYMA20G28510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28510.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 3
GCAGCTGTGATTTCTGGTTTTTCTGCATTGCCGTGGCTTGTCAAACCTCTTTACGGGTTTATTAGgtg--agtctaaaactgcatcactttttcctcttcctgaaatgagtggttcattatttttctcaattttgtcaatcctggggaccacattttcattattgaacttaataatatggcatgcag
 | |||||||| |||||||| |||||| | || |||||||||||||||||||| ||||||||||||||   | |||   ||  ||| |  ||   | | ||| || |||    | |||  ||  | |   |||  |      |    |     | || |||   |                      
ACTGCTGTGATATCTGGTTTCTCTGCACTACCATGGCTTGTCAAACCTCTTTATGGGTTTATTAGgtgccggcctattcctttatctccattgttt-tcccttaattgataaatacatgtttcctatttgtttatttgtgtttaataagtgtttatttattgcag----------------------