Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactatacatacactgttactactttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaag

Basic information

species Glycine max
transcript GLYMA20G28460.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5688043|gb|AI941058.1|AI941058
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCACGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|298186672|gb|HO037305.1|HO037305
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCA
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCA
EST: gi|6915311|gb|AW396841.1|AW396841
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|5126530|gb|AI748266.1|AI748266
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGC
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGC
EST: gi|5126542|gb|AI748278.1|AI748278
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|6916239|gb|AW397769.1|AW397769
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|298180970|gb|HO022409.1|HO022409
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|298175480|gb|HO015113.1|HO015113
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|7146487|gb|AW508409.1|AW508409
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|298178297|gb|HO024032.1|HO024032
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAACGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAG
EST: gi|7232685|gb|AW568039.1|AW568039
EST:     CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAG                         GCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGACAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTTG
EST: gi|6913989|gb|AW395519.1|AW395519
EST:     GCTTGCTTTTGGTATCAATGCTGAGAACCACCAGAGGAACTTCCTTGCAG                         GCGATAAAGAACA-TGTGGTAATGCCGATAGACAGACA-GTGCAGGAGCTT
genomic: CCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactataca ... aaatttgaagGCGAGAAAGA-CAATGTGGTAAGGCAGATAGAAAGACAAGTGCAGGAGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCAGCAGCTTATCCATTTGTCGTCAACGCTACCTCAAACCTCAATTTCCTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGgtactatacatacactgttactactttttttgcatgtgaaacattagctgatttggttatttatttccaattctttggtgcctgattgaaaatttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA