Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacttcatcctctctctttctctcctcaatttctaattcccccctctgaattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATC

Basic information

species Glycine max
transcript GLYMA20G28320.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721633|gb|BW671748.1|BW671748
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|254346033|gb|GR855160.1|GR855160
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|192330976|gb|FK021675.1|FK021675
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|21994433|gb|BQ785961.1|BQ785961
EST:     TCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTNA
genomic: TCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209705549|gb|BW683579.1|BW683579
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209716716|gb|BW654311.1|BW654311
EST:     AGCCATGGACATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|254344895|gb|GR851378.1|GR851378
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|7691481|gb|AW759608.1|AW759608
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|254343068|gb|GR859230.1|GR859230
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|15286177|gb|BI470068.1|BI470068
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|21994650|gb|BQ786178.1|BQ786178
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|9564983|gb|BE474492.1|BE474492
EST:     TCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: TCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|5770593|gb|AI973767.1|AI973767
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|254349048|gb|GR860320.1|GR860320
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|23729484|gb|BU762832.1|BU762832
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209722810|gb|BW669404.1|BW669404
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213617239|gb|DB965166.1|DB965166
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213616525|gb|DB965558.1|DB965558
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|19348584|gb|BM893116.1|BM893116
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|192298814|gb|FG991035.1|FG991035
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|17519365|gb|BM188407.1|BM188407
EST:     AACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|10239012|gb|BE807900.1|BE807900
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|16995950|gb|BM085322.1|BM085322
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213611311|gb|DB972740.1|DB972740
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|16347433|gb|BI973028.1|BI973028
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|15816140|gb|BI788415.1|BI788415
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|151412395|gb|EV282207.1|EV282207
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213591333|gb|DB955709.1|DB955709
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACAACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213598806|gb|DB968277.1|DB968277
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|9819319|gb|BE554832.1|BE554832
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|17023364|gb|BM094398.1|BM094398
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213597914|gb|DB958295.1|DB958295
EST:     GCCATGGCCATCTCCAGCAACGCTTCTCCNTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: GCCATGGCCATCTCCAGCAACGCTTCTCC-TTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|14125734|gb|BG790172.1|BG790172
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213595830|gb|DB955950.1|DB955950
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTC
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACA-CCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTC
EST: gi|209704979|gb|BW653269.1|BW653269
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|17519396|gb|BM188438.1|BM188438
EST:     AACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|7478419|gb|AW666258.1|AW666258
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209701902|gb|BW661342.1|BW661342
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|7691526|gb|AW759652.1|AW759652
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|16347489|gb|BI973084.1|BI973084
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209714943|gb|BW650789.1|BW650789
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213607296|gb|DB957132.1|DB957132
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|4437111|gb|AI522976.1|AI522976
EST:     GGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: GGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|213601663|gb|DB972399.1|DB972399
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209708873|gb|BW661813.1|BW661813
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|14126013|gb|BG790451.1|BG790451
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTGAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|21995108|gb|BQ786636.1|BQ786636
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|9264515|gb|BE352662.1|BE352662
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|19935195|gb|BQ080225.1|BQ080225
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|15664802|gb|BI702181.1|BI702181
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|209724421|gb|BW662952.1|BW662952
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
EST: gi|192305012|gb|FG996130.1|FG996130
EST:     AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCG                         ATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA
genomic: AGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGgtgagtactt ... aattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatcctctctctttctctcctcaatttctaattcccccctctgaattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATC
                           ttctaat  putative branch site (score: 2)
                        aatttctaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtacttcatcctctctctttctctcctcaatttctaattcccccctctgaattaaacagATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA