Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcctagacgacctaataattattatttaagttggtttagttagcataatattcaatattatcatgagtggtttctttgggattgttatag

Basic information

species Glycine max
transcript GLYMA20G28320.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334296|gb|GR844081.1|GR844081
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|4306183|gb|AI443868.1|AI443868
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|27809367|gb|CB063789.1|CB063789
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|209704980|gb|BW653270.1|BW653270
EST:     AAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: AAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|209701903|gb|BW661343.1|BW661343
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|209724422|gb|BW662953.1|BW662953
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|208196913|gb|GD997952.1|GD997952
EST:     GCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|254325197|gb|GR834622.1|GR834622
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|254334297|gb|GR844082.1|GR844082
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|7284911|gb|AW597398.1|AW597398
EST:     GCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|16995575|gb|BM084947.1|BM084947
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|209716717|gb|BW654312.1|BW654312
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|23734168|gb|BU765310.1|BU765310
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|192305013|gb|FG996131.1|FG996131
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|254324669|gb|GR834094.1|GR834094
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|5820325|gb|AI988531.1|AI988531
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|7924108|gb|AW830134.1|AW830134
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|7458621|gb|AW666071.1|AW666071
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAATGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|21677629|gb|BQ629980.1|BQ629980
EST:     CGTTCGCAATATTGCCGCGGGTAATAGAAATGGGTCTCCACACTGTTCTG                         GATGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: CGTTCGCAATATTGCCGCGGG-AAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|9820087|gb|BE555597.1|BE555597
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|213594001|gb|DB983181.1|DB983181
EST:     TCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: TCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|4313511|gb|AI460630.1|AI460630
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|19934385|gb|BQ079415.1|BQ079415
EST:     CGTTCGCAATATTG-CGNCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: CGTTCGCAATATTGCCG-CGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|151407293|gb|EV277108.1|EV277108
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|22522186|gb|BU080997.1|BU080997
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|214005449|gb|DB985515.1|DB985515
EST:     GCGTTCGCAATAATGCCGCGGGAAAAGAAATGGGTCTCCACACTGGCCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|14992139|gb|BI317812.1|BI317812
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|207806124|gb|GD778335.1|GD778335
EST:     GCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|6566914|gb|AW234546.1|AW234546
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|254344896|gb|GR851379.1|GR851379
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|23734136|gb|BU765291.1|BU765291
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|192330977|gb|FK021676.1|FK021676
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|5770625|gb|AI973799.1|AI973799
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|7924393|gb|AW830419.1|AW830419
EST:     GAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|214008675|gb|DB989575.1|DB989575
EST:     TTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTGCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: TTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|18733353|gb|BM527561.1|BM527561
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|6724905|gb|AW309304.1|AW309304
EST:     GCGTTCGCAATATTCCCGCGGCAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
EST: gi|209722824|gb|BW669405.1|BW669405
EST:     GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTG                         GTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG
genomic: GCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcct ... attgttatagGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGgtaatttcctagacgacctaataattattatttaagttggtttagttagcataatattcaatattatcatgagtggtttctttgggattgttatag

- - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - AAGAAA