Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgctactttataatggatattttctctcccatctttattcttagtttcttatcttgctgttttttgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACC

Basic information

species Glycine max
transcript GLYMA20G28320.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633653|gb|DW247016.1|DW247016
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAGTTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|308098201|gb|HO761372.1|HO761372
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|254334296|gb|GR844081.1|GR844081
EST:     GCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: GCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|27809367|gb|CB063789.1|CB063789
EST:     ATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: ATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|254325197|gb|GR834622.1|GR834622
EST:     CTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|7588328|gb|AW704126.1|AW704126
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|10844059|gb|BF067396.1|BF067396
EST:     CTGATCATCACTTACGGAACCTTCTCTGCGCCATCGAACAGAGAAAAATT                         GCTTTTACTAATCCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|193614452|gb|FK565990.1|FK565990
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|10847500|gb|BF070178.1|BF070178
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|16995575|gb|BM084947.1|BM084947
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|209716717|gb|BW654312.1|BW654312
EST:     ACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: ACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|23734168|gb|BU765310.1|BU765310
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|7924108|gb|AW830134.1|AW830134
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|7458621|gb|AW666071.1|AW666071
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|4313511|gb|AI460630.1|AI460630
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|23734136|gb|BU765291.1|BU765291
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|5770625|gb|AI973799.1|AI973799
EST:     CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: CTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
EST: gi|18733353|gb|BM527561.1|BM527561
EST:     GCACCATCAAACAGAGAAAAATT                         GTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT
genomic: GCACCATCAAACAGAGAAAAATTgtatgttgct ... tgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctctcccatctttattcttagtttcttatcttgctgttttttgtttcctagGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACC
                         tttcttatcttgctgt  CT-rich tract
              tttattcttagttt  TA-rich tract