Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatcaggattcactttttttaagccaaacacatgttgaaataagctgtatttgatccacatgtcaacaaacaaccaagcatctttatgttgcagGCAATTCAAAATATGAGGCTATTTATATTAGATCATCACGACTCGTTGATGCCATACATTAGTCGAATAAACTCTACCAACACAAAGACTTATGCCTCTA

Basic information

species Glycine max
transcript GLYMA20G28290.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986168|gb|BE660276.1|BE660276
EST:     TCAGAGCAACGCACATAGAAAATAGTTTGGATGGGCTTACAATAGACGAG                         GCAATTCAAAATATGAGGCTATTTATATTAGATCATCACGACTCGTTGATG
genomic: TCAGAGCAACGCACATAGAAAATAGTTTGGATGGGCTTACAATAGACGAGgtactaatca ... tatgttgcagGCAATTCAAAATATGAGGCTATTTATATTAGATCATCACGACTCGTTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagctgtatttgatccacatgtcaacaaacaaccaagcatctttatgttgcagGCAATTCAAAATATGAGGCTATTTATATTAGATCATCACGACTCGTTGATGCCATACATTAGTCGAATAAACTCTACCAACACAAAGACTTATGCCTCTA
         atttgat  putative branch site (score: 5)
                                       catcttt  putative PPT
        tatttgat  TA-rich tract