1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cataaaagaactgcatctaagttttgtgctttataattttattagctattcatgacatatttgtttttgcaagtgagctaaatctaaatgccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACTAGCTCCATCAGAGCAACGCACATAGAAAATAGTTTGGATGGGCTTACAA
species | Glycine max |
transcript | GLYMA20G28290.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGNCGTCTCCAA GAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACTEST: gi|15203969|gb|BI426746.1|BI426746
genomic: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtata ... ccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
EST: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAA GAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
genomic: CAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTCCAAgtactgtata ... ccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACT
ctattcatgacatatttgtttttgcaagtgagctaaatctaaatgccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACTAGCTCCATCAGAGCAACGCACATAGAAAATAGTTTGGATGGGCTTACAA
atctaaa putative branch site (score: 3)
acatatttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataaaagaactgcatctaagttttgtgctttataattttattagctattcatgacatatttgtttttgcaagtgagctaaatctaaatgccatatgcagGAATTTCCCCCGGCCAGCAAACTAGACCCCAGCGTATATGGAGACCAAACTAGCTCCATCAGAGCAACGCACATAGAAAATAGTTTGGATGGGCTTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- -aaaagaa
- - - - - ctgcatc
- - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagtg