1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTAATTCTAGTCAGGTGAGTGATGGTGCTGCAGCTGTTCTGCTGATGAAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatttgtaatatagaggctttagtccctggcagtatttatatgctgattccaaattgacatgctgtgtgctctatgaagaaatgaaggaccaat...
species | Glycine max |
transcript | GLYMA20G18980.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|254346645|gb|GR856367.1|GR856367
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGGTGCGTTGCAAAAGGGCCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTGGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|192299235|gb|FG992473.1|FG992473
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|192310414|gb|FG999157.1|FG999157
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|254331906|gb|GR843649.1|GR843649
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTA-CCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|308099050|gb|HO760891.1|HO760891
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTTGGTGTTGATCCTGCCATAATGGGGTGTTGGGTCCEST: gi|7591443|gb|AW707176.1|AW707176
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTT-GGTGTTGATCCTGCCATAATGGG-TGTTGG-TCC
EST: GGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|254319377|gb|GR828997.1|GR828997
genomic: GGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGT-CTGCEST: gi|298174872|gb|HO014789.1|HO014789
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|51335173|gb|CO979039.1|CO979039
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|4397476|gb|AI496473.1|AI496473
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG CACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGCEST: gi|254346644|gb|GR856366.1|GR856366
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
EST: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAG GACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
genomic: AAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatt ... tgtcatgtagGACTTTCGCAGCAGTTGGTGTTGATCCTGCCATAATGGGTGTTGGTCCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATTCTAGTCAGGTGAGTGATGGTGCTGCAGCTGTTCTGCTGATGAAAAGAAGTGTTGCGTTGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGgtacttcatttgtaatatagaggctttagtccctggcagtatttatatgctgattccaaattgacatgctgtgtgctctatgaagaaatgaaggaccaat
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT