Sequence
atgc intronic sequence ATGC exonic sequence...ttctggaacaaaattgtttctttgctccaaaacagtgagaccttatgaatggagaaatgttgagatattaactgtttaaatctaatttaatatgtaccagGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGGAATAGTGATTCAGACGAAACAATAGCTTTCCTGTTTGGTGACATGGGAA
Basic information
species | Glycine max |
transcript | GLYMA20G03260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023256|gb|BM094290.1|BM094290EST: GTTCTCATAGGTTTGAAGAAGGGACAGAGGTATTATTACAAG GTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGG
genomic: GTTCTCATAGGTTTGAAGAAGGGACAGAGGTATTATTACAAGgtaataatga ... tatgtaccagGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGG
EST:
gi|9566019|gb|BE475590.1|BE475590EST: ACGACGCCGTTCTCATAGGTTTGAAGAAGGGACAGAGGTATTATTACAAG GTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGG
genomic: ACGACGCCGTTCTCATAGGTTTGAAGAAGGGACAGAGGTATTATTACAAGgtaataatga ... tatgtaccagGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaatggagaaatgttgagatattaactgtttaaatctaatttaatatgtaccagGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGGAATAGTGATTCAGACGAAACAATAGCTTTCCTGTTTGGTGACATGGGAA
ttgagatattaactgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctggaacaaaattgtttctttgctccaaaacagtgagaccttatgaatggagaaatgttgagatattaactgtttaaatctaatttaatatgtaccagGTTGGAAATGATAACGGAGGTTGGAGTGCAACTCAAAGTTTTGTGTCGAGGAATAGTGATTCAGACGAAACAATAGCTTTCCTGTTTGGTGACATGGGAA
- - - aacaaaa
- - - - - - - - - - - - ctccaaa
- - - - - - - - - - - - - - - - - - - - ccttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgag