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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAGgtactttccttaattagcaaacattttatttaaaaatattttaaggtttacaatcaaattggttggttttgtattcttgtaattcatttttatatggctgatattgtaatcgatgttatcagtgtttgtttctgacatttctctttgtgtgtttag

Basic information

species Glycine max
transcript GLYMA20G03250.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03250.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g55090.1 (Oryza sativa), 5'ss of exon 12
GTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAGgtactttccttaattagcaaacattttatttaaaaatattttaaggtttacaatcaaattggttggttttgtattcttgtaattcatttttatatggctgatattgtaatcgatgttatcagtgtttgtttctgacatttctctttgtgtgtttag
||||||||| |||| ||||| ||||| |||||||||||   |||||| |||| |||||| | ||| ||||| |||||||| |      |||  |   |||||| |          | |  || || |||   ||| |     |  |  ||   |    | |  ||   | |  ||  |   |||||  | |  ||  | | ||  ||||   ||                   
GTTGTATTTATTCCAGATTATAATGTTAGTGTTGCTGAGGCGCTAATCCCTGCCAGTGAATTGTCTCAGCATATCAGgtaat------aatctggctacatttca---------gtctacagattcacagaaaaactctcctgcctattagaatgtagagtttttgccagactgccaac--tgtaagtgtttctacaaat-ttaatttcacgcag------------------

upper sequence: GLYMA20G03250.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G074158_T01 (Zea mays), 5'ss of exon 12
GTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAGgtactttccttaattagcaaacattttatttaaaaatattttaaggtttacaatcaaattggttggttttgtattcttgtaattcatttttatatggctgatattgtaatcgatgttatcagtgtttgtttctgacatttctctttgtgtgtttag
|| ||||||||||| || || ||||| |||||||| ||   ||||||||||| |||||| | ||| ||||| |||||||| |    | |  |  ||    |||| | |    |||      | |||    |    || |||    |  |||| | |   ||||                                                                      
GTCGTATTTGTTCCAGACTATAATGTTAGTGTTGCCGAGGCGCTAATTCCTGCCAGTGAATTGTCACAGCATATCAGgtaatagtgt-acctgccactttttttttctctcgata-----ggatttgtgtt----ttcgttaacatcatattatcg--gttcag---------------------------------------------------------------------

upper sequence: GLYMA20G03250.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g00730.t01 (Vitis vinifera), 5'ss of exon 12
GTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAGgtactttc-cttaattagcaaacattttatttaaaaatattttaaggtttacaatcaaattggttggttttgtattcttgtaattcatttttatatggctgatattgtaatcgatgttatcagtgtttgtttctgacatttctctttgtgtgtttag
|| || ||||| ||||||||||||||||||||||| ||| |||| || ||||| ||||||  ||||||||| ||||||||||||   |||  |   |||  |    |      | |  |    | | | | | | | |||   ||||  || | || | || |   |     |   | || |   | |   | ||  || || ||                             
GTCGTCTTTGTCCCTGATTACAATGTCAGTGTTGCAGAAGTGCTTATACCTGGTAGTGAGCTGTCCCAGCATATCAGgtactttgatttagctcataaaagtggcctaacgccaaagctctctgctaagagttagactggcaagtttcttaatgttttgatactgatcgtctttcttaatttaacattt--tctttccactggttag---------------------------