Sequence
atgc intronic sequence ATGC exonic sequence...aagtctacaaggaaaagctaaaataattaaggcaaagggtgttaagctagcctcttctttctaagaagtatgactaatcttagttggtcttaatctgtagGTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAG
Basic information
species | Glycine max |
transcript | GLYMA20G03250.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G03250.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g55090.1 (Oryza sativa), 3'ss of exon 11
aagtctacaaggaaaagctaaaataattaa-ggcaaagggtgttaagctagcctcttctttctaagaagtatgactaatcttagttggtcttaatctgtagGTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAG
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-tgtttttcttatactatagaaataagcatcagtattgaaaactcagtaatttccttatgctgcaatcagagaactaactgtgatatgcttttttgtcaagGTTGTATTTATTCCAGATTATAATGTTAGTGTTGCTGAGGCGCTAATCCCTGCCAGTGAATTGTCTCAGCATATCAG
upper sequence: GLYMA20G03250.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g00730.t01 (Vitis vinifera), 3'ss of exon 11
-------aagtctacaaggaaaagctaaaataattaaggcaaagggtgttaagctagcctcttctttctaagaagtatgactaatcttagttggtcttaatctgtagGTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAG
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ttttttctaatttggtatcattttctcaaatgggttactccatgg---taaagaaatctgcttattgcttataagcatga----tcctgtttttcaaccgattacagGTCGTCTTTGTCCCTGATTACAATGTCAGTGTTGCAGAAGTGCTTATACCTGGTAGTGAGCTGTCCCAGCATATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctagcctcttctttctaagaagtatgactaatcttagttggtcttaatctgtagGTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAG
taatctta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtctacaaggaaaagctaaaataattaaggcaaagggtgttaagctagcctcttctttctaagaagtatgactaatcttagttggtcttaatctgtagGTTGTATTTGTTCCTGATTACAATGTCAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAGTCGTCCCAGCACATCAG
- - ctacaag
- - - - - -gaaaagc
- - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - gggtgtt