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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATATgtatgtcatgccattcaatgtaaaattgatgtatttcttcttatgttttgtttatattttgtttgattcaaaatttctatatgaaaattatgaattttatccatacaattgtgtaaccagtttctcttgtttttttaattcttcttacctttgtgcag

Basic information

species Glycine max
transcript GLYMA20G03160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G061745_T03 (Zea mays), 5'ss of exon 5
TTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATATgtatgtcatgccattcaatgtaaaattgatgtatttcttcttatgttttgtttatattttgtttgattcaaaatttctatatgaaaattatgaattttatccatacaattgtgtaaccagtttctcttgtttttttaattcttcttacctttgtgcag
                ||||| ||||| |||||||| ||||||||| | ||||| || ||||| |||||  || ||||||||||||||||  ||| | | ||    ||    | ||            |  |  |    || | |  |||||  |    || | ||     | | |||||| |   ||  |  |  || | |   |                                            
----------------AATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTGCAGCTCATGAAGTTGAGGAAATTGgtaagacttgttgatctgcatgaa---------caacaaccaaaaagttatatggattttacta---tcgagatggtattgttaaaattgtt--ttcaagtcggacgacttgct--------------------------------------------

upper sequence: GLYMA20G03160.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G368908_T02 (Zea mays), 5'ss of exon 5
TTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATATgtatgtcatgcc-attcaatgtaaaattgatgtatttcttcttatgttttgttta-tattttgtt--tgattcaaaatttctatatgaaaattatgaattttatccatacaattgtgtaaccagtttctcttgtttttttaattcttcttacctttgtgcag
                ||||| || || |||||||| ||||||||| | ||||| || ||||| |||||| || ||||||||||||||||  ||| | | ||   ||   ||     ||  |            |||||    |||| ||| | | |  || |   |||| ||   ||     ||||    |   ||                                                         
----------------AATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtaagacttgttgatctgatactgcatgaacaacaaaaaggatatgtggattttactatctagatggtgttgtcaaatgtcatcat-----ttataggctccttc---------------------------------------------------------