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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcctgatgtatgtgatggtgggaggggagctagtgtttgctcaacacaaaattagtattccaagaaactgacatatagTTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATAT

Basic information

species Glycine max
transcript GLYMA20G03160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03160.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 4
gtaatcctgatgtatgtgatggtgggaggggagctagtgtttgctcaacacaaaattagtattccaagaaactgacatatagTTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATAT
           |||  | |   | |  | |  ||| | ||||        |    | ||| ||     ||  ||         || ||   | |||| ||||| ||||| |||||||| ||||||||| | ||||| || ||||| |||||  || ||||||||||||||||  
-----------gtacataac--ttgctgagttgctggagtttttcacttgcttgctcagtgttt----aatttg---------ttttttcctttacagAATGCAACTCAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTGCAGCTCATGAAGTTGAGGAAATTG

upper sequence: GLYMA20G03160.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G368908_T03 (Zea mays), 3'ss of exon 1
gtaatcctgatgtatgtgatggtgggaggggagctagtgtttgctcaacacaaaattagtattccaagaaactgacatatagTTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATAT
           ||||||  ||| ||  | |  ||| | || |        |    | ||| ||  |           |||  ||  | |  |   || ||||| || || |||||||| ||||||||| | ||||| || ||||| |||||| || ||||||||||||||||  
-----------gtatgtc-tgggggatgagatgctggagtgtttcacttgcttgctcagtgtttaa-----------tatttttgttgcccttcccagAATGCTACACAGAAAAGTCAGAAGGTATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggagctagtgtttgctcaacacaaaattagtattccaagaaactgacatatagTTTATTCTGTGTACATAATGCCACTCAAAAAAGTCAAAAGGTATTTATACATGTGCCATCAGAGATTGCTACTAATGAAGTTGAGGAAATAT
                                          aactgac  putative branch site (score: 2)
                      acaaaattagtatt  TA-rich tract