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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGgtaattttttctattttttttttctcttggtccatacaagcatagttgcaaaggatcataaaacaacaaactttcaagttattttattctctgttgcaat...

Basic information

species Glycine max
transcript GLYMA20G03120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
CTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGgtaattttttctattttttttttctcttggtccatacaagcatagttgcaaaggatcataaaacaacaaactttcaagttattttattctctgttgcaat
  || || | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||| ||||||||||||||||   |  | |||      |  | | | |  | ||||| |   |  ||| |||  | |     |  | ||   |  |      ||  | |       
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata-tgtttcaagcatagcatagactgttcaagcct---tttaaaagattgttatg-gcctgatttgagaaatgaaacttttacag-------

upper sequence: GLYMA20G03120.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 5'ss of exon 4
CTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGgtaattttttctattttttttttctcttggtccatacaa-gcatagttgcaaaggatcataaaacaacaaactttcaagttattttattctctgttgcaat
 |||||||   |||||  |  |  |||| ||||| || || || ||||| ||  | |||||||| |||||||||||||||||  ||||||| |||||  |||||  ||||   ||    ||||   |  | |  |   | |     ||     ||          |||  ||| |    ||   |   |    || |    
ATACAGCAGTGACAGACTTGGCGCCAACTCATCCGATTCGGCTGGGACTGGCCTTGAACTTCTCTGTCTTCTATTATGAGATTTTGAACTCCCCTGAGCGgtaagattttgagttgaggttttggat--gcctgtgggacgtgcttttcttttggcggggttcgtaactgactgtgcgattgactgcgtggtggtag----