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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtctaattaaattctctttcagcaatattaatgaacatggggtttataataattgattcatacctatataatttcttgtgtttatccatatttggtgttgtttgtttgatgttcaaactattggtgtttttagGCTGCTTTAGCTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT

Basic information

species Glycine max
transcript GLYMA20G03120.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03120.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 3'ss of exon 3
gttggtgtctaattaaattctctttcagcaatattaatgaacatggggtttataataattgattcatacctatataatttcttgtg-tttatccatatttggtgttgtttgtttgatgttcaaactattggtgtttttagGCTGCTTTAGCTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
                           |  | ||   | ||||       || | | | || ||| ||  ||| |||  | || |  ||    ||  |    |    ||| |||| | ||              | ||||||||| |     || || | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||| |
---------------------------gtgacatctcttaaca-aacacatagagtcaatg-ttcgtatttatgtaacattttctaattcgatcacttgatataccctttctttgctatt--------------tgttagGCTGCCTCCAGCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatccatatttggtgttgtttgtttgatgttcaaactattggtgtttttagGCTGCTTTAGCTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACT
                         gtttgat  putative branch site (score: 5)
                                              tgttttt  putative PPT
                                    aaactatt  TA-rich tract