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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAGgtatggtatattacttctcctatgctatgttcattcctttccttcttcattttaatcatgcattcttctctttttcctcttatatccatcag

Basic information

species Glycine max
transcript GLYMA20G03090.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03090.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G898684_T08 (Zea mays), 5'ss of exon 3
CTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAGgtatggtatattacttctcctatgctatgttcattcctttccttcttcattttaatcatgcattcttctcttttt--cctcttata-tccatcag----------------
 ||   | |||||||||||||||| || |||||||| ||||| || || || ||| | ||||| || ||||| || || ||||| ||||||||| | |||| |    ||        | |||  || |   ||  || |  |      |    |  ||  ||| |   || |   || ||| || |   |  |                
TTCTGTTCTAGAATGGAGATACACCTACCCATTGCTCGAGGAGGCCGGATTGGAGGCTTGGGCTGTGGACATCCTTGGGTGGGGCTTCTCTGATTTGGgtacgccccatcctgcacaccatgtgatctggtttggttactgtacctggtaaggttgtgatttcgtactttgtaggccccttgtaatatctttgcttgtctcgttcgtag

upper sequence: GLYMA20G03090.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G13820.1 (Arabidopsis thaliana), 5'ss of exon 3
CTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAGgtatggtatattacttctcctatgctatgttcattcctttccttcttcattttaatcatgcattcttc-----tctttttcctcttatatccatcag-------
 || |||||||| ||||||||||| ||||| |||||||| ||||| ||||| || ||||||||| |||| || || ||||||||||| |||||| ||||| | ||   |  ||| || | | |||  | | |||| ||  |  ||  | ||| ||    |   | |     | ||| | |||||  |  | ||         
TTCTTGTTTAGAGTGGAGATACACTTATCCGTTGCTTGAAGAAGCCGGTTTAGAAACATGGGCATTTGATATCCTTGGTTGGGGTTTTTCTGATTTAGgttttgtccctctcttatcatttactacttcctttccctttttgttttctgttattctccaaacttgccaatgtttttatactcttgcacacttctcttttcag