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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctcaaatcatgcaagatacagaattagtttgtacatttttatgctcaagttacctttagatttcatttcactcctcattgttcagCTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAG

Basic information

species Glycine max
transcript GLYMA20G03090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G898684_T08 (Zea mays), 3'ss of exon 2
----------------------------------------------------------------------------gtgctcaaatcatgcaagatacagaattagtttgtacatttttatgct-caagttacctttagatttcatttcactcctcattgttcagCTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAG
                                                                             ||||| |     ||  |   ||  |||    ||    |  || ||||    | || |  |      ||||| | |      | | ||| ||   | |||||||||||||||| || |||||||| ||||| || || || ||| | ||||| || ||||| || || ||||| ||||||||| | |
gtgggctccaaatttctaatgcacagcaaagttcgttgctcaactaggtcaggtttttagtgctagctggtcatcattgctcgag--gagcctgtcccaatattgaaatgcg-gtggttctgctatctgctatcagtgtggaccattttaatgtatcgtctacagTTCTGTTCTAGAATGGAGATACACCTACCCATTGCTCGAGGAGGCCGGATTGGAGGCTTGGGCTGTGGACATCCTTGGGTGGGGCTTCTCTGATTTGG

upper sequence: GLYMA20G03090.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G13820.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgctcaaatcatgcaagatacagaattagtttgtacatttt--tatgctcaagttacctttagatttcatttcactcctcattgttcagCTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAG
                       | | || |    |  ||||  | || | || |    | | || ||  ||  |   ||  |    ||| || |||||||| ||||||||||| ||||| |||||||| ||||| ||||| || ||||||||| |||| || || ||||||||||| |||||| |||
-----------------------gtactaatcaaaatgttttggtttgttgaattagtgtcttgagtt--ttaaaactcttgtaaaacagTTCTTGTTTAGAGTGGAGATACACTTATCCGTTGCTTGAAGAAGCCGGTTTAGAAACATGGGCATTTGATATCCTTGGTTGGGGTTTTTCTGATTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacatttttatgctcaagttacctttagatttcatttcactcctcattgttcagCTCATGTTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTTTTGAGACATGGGCAGTTGACATTCTAGGTTGGGGTTTCTCTGATCTAG
                              tttcatttcactcctc  CT-rich tract
                        tttagatttcattt  TA-rich tract