1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttgatttcatatcttatcatcaaattctgttatctattcaattctcattttggataaaccctactaagatttttctctctcatttcatttggttgtagATGGAAAATCATGAAACTACCCAGAATGAGTCAACATCATCTGCTGAAGTTTCTCTCAAGTCAACCATGGGAAGATCTTTCCAGGCAGCGGAT
species | Glycine max |
transcript | GLYMA20G03000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTACTCATCCCTATTTGAAGATGCTCAAGAAAACAAATATTCATCTGAG ATGGAAAATCATGAAACTACCCAGAATGAGTCAACATCATCTGCTGAAGTTEST: gi|27426163|gb|CA937683.1|CA937683
genomic: ACTACTCATCCCTATTTGAAGATGCTCAAGAAAACAAATATTCATCTGAGgtaggcttaa ... ttggttgtagATGGAAAATCATGAAACTACCCAGAATGAGTCAACATCATCTGCTGAAGTT
EST: ACTACTCATCCCTATTTGAAGATGCTCAAGAAAACAAATATTCATCTGAG ATGGAAAATCATGAAACTACCCAGAATGAG
genomic: ACTACTCATCCCTATTTGAAGATGCTCAAGAAAACAAATATTCATCTGAGgtaggcttaa ... ttggttgtagATGGAAAATCATGAAACTACCCAGAATGAG
ctcattttggataaaccctactaagatttttctctctcatttcatttggttgtagATGGAAAATCATGAAACTACCCAGAATGAGTCAACATCATCTGCTGAAGTTTCTCTCAAGTCAACCATGGGAAGATCTTTCCAGGCAGCGGAT
tttttctctctcattt CT-rich tract
taagattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgatttcatatcttatcatcaaattctgttatctattcaattctcattttggataaaccctactaagatttttctctctcatttcatttggttgtagATGGAAAATCATGAAACTACCCAGAATGAGTCAACATCATCTGCTGAAGTTTCTCTCAAGTCAACCATGGGAAGATCTTTCCAGGCAGCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctact