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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTAGCAGTCAGAGCCTTGGCCGCACCTACGCTTTTCTTCTCTTTTGTGCCATCTTGCTCGACATTTCTTGGTTCATTCTTTTCGCCAACGAAATTTGgtgcgtcctgctatttctttcgtttctttctttctttacttgatataattccttttttttatatatataatgtaatttagtaaatttacttttcatgtac...

Basic information

species Glycine max
transcript GLYMA20G03000.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03000.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g00110.t01 (Vitis vinifera), 5'ss of exon 2
AGAGTAGCAGTCAGAGCCTTGGCCGCACCTACGCTTTTCTTCTCTTTTGTGCCATCTTGCTCGACATTTCTTGGTTCATTCTTTTCGCCAACGAAATTTGgtgcgtcctgctatttctttcgtttctttctttctttact-tgatataattccttttttttatatatataatgtaatttagtaaatttacttttcatgtac-
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AGAGTAGCAGTCAGAGCCTTGGCCGAACTTACGCCGTTCTGCTTTTCTTCTCCATTTTGCTCGACATCTCTTGGTTCACTCTCTTCTCTCATGAGATATGgtgcattcc-taatctctttttcttgtttaattttttgttctaatacgcctgaattattggaaat-cacaaatcgagctttcattcttgcaagttaaacatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426163|gb|CA937683.1|CA937683
EST:     GCCATCTTGCTCGACATTTCTTGGTTCATTCTTTTCGCCAACGAAATTTG                         GAACATTTCTACCAAGTATTACACAACATTTTTCACATTTTCAGTGAAACT
genomic: GCCATCTTGCTCGACATTTCTTGGTTCATTCTTTTCGCCAACGAAATTTGgtgcgtcctg ... ttgtttgcagGAACATTTCTACCAAGTATTACACAACATTTTTCACATTTTCAGTGAAACT