Sequence
atgc intronic sequence ATGC exonic sequenceATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
Basic information
species | Glycine max |
transcript | GLYMA20G02860.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 4
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
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ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAATATTCAAGGTTGCTCAAAATGCACTTGCTCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattac--tcttcctcattacaa--atagtaatccac-----aaacatccctatttac-tacgccttaaaaggggtgtacag
upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
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ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatc--------actgcaaatagtaatccacaaa-catgcctacttac-tataccttaaaaggggtgtgcag
upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G45190.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
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ATGTTTATCATCCTTATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAAGTTGCATGGAATTTTGTTAATGATGGgtacgttcaagaactatttccttctaaagcttcca-ataattctatgtgccttgtattttcgtcttcatac-aatgaaaagtggcttgcag
upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 4
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTT--TAATGTTGCGAAGAAT---GCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaattt--------------------gtttgaatttaactg-tgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
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----TTGA-GGCAATGAAAAAATTCAAAGCCGCACAGGATGCTCTTGCTCAGGTTGCATGGAATTTTGCTCTTGCTCAAGTTGCATGGAATTTTGTCAATGATGGgtatgattaagatgctttttcatgtctctcttttttgatagttccatttcaaatggtctctcttcctctctttctcttcttcactcacacactggaa---agcggcttgcag
upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27727 (Selaginella moellendorffii), 5'ss of exon 4
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgattt-atttttaaaatatatttgatcaca-cactggaaaaaagtggctttcag--------------------
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ACGTTCACCATCCATACAGACCGCTGGTGGCCGCCATAAAAAAGTTCAACGTCTCTCAACATGCGCTGGCTCAAGTTGCGTGGAACTTTGTCAATGATGGgtaagctctcgcac--accagtaggaacttca--gtctcgactggagtgttggagtccgtgttgtttcatcactttgatgagatgggaatgaagcagtggaagggatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208131238|gb|GD931125.1|GD931125EST: GTTGCGAAGAATGCCCTTGCACAAGTTGCATGGAACTTTGTTAATGATGG GCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGG
genomic: GTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttg ... tggctttcagGCTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
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