Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatatttaattattactttctagattcacatacttgctgtgtttaggatagctctgagggatttta...

Basic information

species Glycine max
transcript GLYMA20G02860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 2
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatattta-attattactttctagattcacatacttgctgtgtttaggatagctctgagggatttta
||||||  || || | ||| || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || |||||||||||||||| ||| |  |  ||  |  |  ||  |||   || |||||  | |   | || ||  |   |||   |   |  |  |   ||| |  |    | | || 
ATTCCCTTTCGAGGAGAGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGACTTAAAGTgtaagtata-tattataccacaaattctatgtcaattatttttacttgcatttcctgaaaatacaacatccattcgcctgtaatatcattagctgttattt

upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 10
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatattta-attattactttctagattcacatacttgctgtgtttaggatagctctgagggatttta-
|||||  ||| || |  || || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || ||||| |||||||||| ||| |  |  ||  |  |  ||  |||   || |||||  | |  |  || ||  |   |||   |   |  |  | | || | | |     | |||| 
ATTCCGTATCGAGGAGGGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatatt-ttataccacaaattctatgtcaattatttttacttctgtttcctgaaaatacaatatccattcgcct-gcattgttattttcaaatttat

upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G19600.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg--tgctagcctgctgatatta-ttataaatatttaattattactttctagattcacatacttgctgtgtttaggatagctctgagggatttta
|||| || |||||    ||| | |||||||| ||||| || ||||| || |||||||||||||| ||||| ||||||||||||||||||||| | ||||||| ||| |    | ||  |||    || | |  | || | |||  ||| || | ||  |      | | |  |||  || ||||| |   ||      |  | 
ATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTgtaagtataaatttctgacctatatatttcagctttatacattgcatt-ttccatttgattacttcttgcgagcttggtctaggaca-tgctagtttctcct-

upper sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatatttaattattactttctagattcacatacttgctgtgtttagg-atagctctgagggatttta-
||||||||||||||| |||||| |||||||||| ||||||||||||| | || || ||||||||||| ||||||||||||||||||||||| |||||||||| |||    | | |   || || | |   | ||  | |    ||   |||   |  |  ||  |  ||   ||  || |    | |  |   || ||  | 
ATTCCCCATCAAGAAGAGATGGCATTGACTTGAGGAAAGAGACATATTTCCGAAAATCATACTGCACTTTCTTGCAGGATTTAGGCATGAGGCTTAAAGTgtaagtcctatac-aaaatgttgttctggat-tatgtctcctttttgaactggttgtaggcaattctttcaggtaattggttgcatcatttcaggtttgcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207766610|gb|GD738798.1|GD738798
EST:     CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGT                         GCCTCAGGTAACTATAGCAACGGCCATAATACTTTT
genomic: CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg ... gcccctgcagGCCTCAGGTAACTATAGCAACGGCCATAAT-CTTTT
EST: gi|208067704|gb|GD864882.1|GD864882
EST:     CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGT                         GCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT
genomic: CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg ... gcccctgcagGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT
EST: gi|193466882|gb|FK430735.1|FK430735
EST:     AGTCATACTGCACATTTCTTGAACAAGGATTTAGGCATGAGACTTAAAGT                         GCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT
genomic: AGTCATACTGCACA-TTCTTG--C-AGGATTTAGGCATGAGACTTAAAGTgtgagtttgg ... gcccctgcagGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT
EST: gi|193363879|gb|FK329685.1|FK329685
EST:     CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGT                         GCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT
genomic: CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg ... gcccctgcagGCCTCAGGTAACTATAGCAACGGCCATAATCTTTTGTCATCGGTTCTTTCT