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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcatcattatatgtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagta...

Basic information

species Glycine max
transcript GLYMA20G02720.4
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02720.4 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g01660.t01 (Vitis vinifera), 5'ss of exon 4
GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcatcattatat------gtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagta
||||| ||| | ||||||||||||||||||||||| || || ||| | || |||||| | ||||||||| | |   | | |      || |||||   |||       | | |||       ||| |||||||     | |  ||| | |  ||||||     ||| | 
GTTCTAGACAGAGGGGAAAAGATAGAGCTTCTGGTGGATAAGACTCATAACCTTCATGAACAGgtcagtacttttctctttctcgctgtccatctatttgtcttcatct-gtgttcactgattctggaacttaac---acttctctatga-acttcaac-cggttaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193474159|gb|FK441934.1|FK441934
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193496423|gb|FK459013.1|FK459013
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATG
EST: gi|208170928|gb|GD969267.1|GD969267
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATT
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATT
EST: gi|193583891|gb|FK542867.1|FK542867
EST:     AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: AAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208148135|gb|GD949737.1|GD949737
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGG
EST: gi|193724016|gb|FK658802.1|FK658802
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTC
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTC
EST: gi|193406243|gb|FK373480.1|FK373480
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTC
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTC
EST: gi|208174145|gb|GD968624.1|GD968624
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208300087|gb|GE097206.1|GE097206
EST:     TTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: TTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208183980|gb|GD983686.1|GD983686
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAAT
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAAT
EST: gi|207825578|gb|GD797289.1|GD797289
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208310339|gb|GE107673.1|GE107673
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACC-G                         G--G-CACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193693214|gb|FK633763.1|FK633763
EST:     GGAAAANATAGAGCTTCTGGTTGAACAAAACTGAAAATCTTCATCACCAG                         GCAGGCACAAG
genomic: GGAAAAGATAGAGCTTCTGGTTGA-CAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAG
EST: gi|207704382|gb|GD686625.1|GD686625
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193711341|gb|FK643908.1|FK643908
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207681989|gb|GD662512.1|GD662512
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193426410|gb|FK386581.1|FK386581
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208025885|gb|GD824353.1|GD824353
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207764891|gb|GD737138.1|GD737138
EST:     GGGAAAAGATAGAGCTTCCGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTC
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTC
EST: gi|193631355|gb|FK583732.1|FK583732
EST:     GG-AAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCG
EST: gi|207778255|gb|GD748398.1|GD748398
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGG
EST: gi|208074041|gb|GD872018.1|GD872018
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193698400|gb|FK641557.1|FK641557
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAA
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAA
EST: gi|207756135|gb|GD727034.1|GD727034
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATT
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATT
EST: gi|207803764|gb|GD772205.1|GD772205
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCAA-CA-AAGACTTCAGGAATTCTGGG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGG
EST: gi|193378650|gb|FK343843.1|FK343843
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATT
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATT
EST: gi|193336633|gb|FK304483.1|FK304483
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208273061|gb|GE068373.1|GE068373
EST:     CTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: CTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207755967|gb|GD728000.1|GD728000
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193669026|gb|FK614048.1|FK614048
EST:     GGAAAAGGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGAAAA-GATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193515311|gb|FK472873.1|FK472873
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193385164|gb|FK352318.1|FK352318
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193536950|gb|FK492332.1|FK492332
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207843079|gb|GD815589.1|GD815589
EST:     GGAAAAGATAGAGCTTCTGGTTGACTAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGAAAAGATAGAGCTTCTGGTTGAC-AAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193488537|gb|FK454442.1|FK454442
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|58014462|gb|CX701204.1|CX701204
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193493629|gb|FK458811.1|FK458811
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208066372|gb|GD863091.1|GD863091
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208294512|gb|GE094303.1|GE094303
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193677615|gb|FK616217.1|FK616217
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAAT
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAAT
EST: gi|208293959|gb|GE090782.1|GE090782
EST:     CTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: CTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193720164|gb|FK655308.1|FK655308
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCA-                         --AG-CACAAGACTTCAGG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGG
EST: gi|208165503|gb|GD961615.1|GD961615
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208178812|gb|GD975293.1|GD975293
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193466757|gb|FK432136.1|FK432136
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|7285239|gb|AW597726.1|AW597726
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193420459|gb|FK390466.1|FK390466
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207694792|gb|GD677967.1|GD677967
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193406482|gb|FK371787.1|FK371787
EST:     ACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: ACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193401305|gb|FK367532.1|FK367532
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193307901|gb|FK271545.1|FK271545
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208292853|gb|GE094633.1|GE094633
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA---ACAAGACTTCAGG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGG
EST: gi|151401881|gb|EV271694.1|EV271694
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|58015276|gb|CX702018.1|CX702018
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193333395|gb|FK297409.1|FK297409
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208133105|gb|GD928728.1|GD928728
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|193534096|gb|FK489867.1|FK489867
EST:     TAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GTCA-GCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGT
genomic: TAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagG-CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGT
EST: gi|193412740|gb|FK376963.1|FK376963
EST:     AACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: AACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208214183|gb|GE014572.1|GE014572
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207714687|gb|GD695969.1|GD695969
EST:     TGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAATATGTG
genomic: TGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207683974|gb|GD667447.1|GD667447
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208119999|gb|GD918380.1|GD918380
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208252227|gb|GE046603.1|GE046603
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACC-G                         G--G-CACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208072048|gb|GD871506.1|GD871506
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207795290|gb|GD764453.1|GD764453
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208135982|gb|GD936281.1|GD936281
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208143983|gb|GD941586.1|GD941586
EST:     GGAAAAGATAGAGCTTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGAAAAGATAGAGC-TTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|192327642|gb|FK021319.1|FK021319
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|7639920|gb|AW734232.1|AW734232
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208312055|gb|GE109879.1|GE109879
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208087131|gb|GD887179.1|GD887179
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208119998|gb|GD918379.1|GD918379
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|192331324|gb|FK021021.1|FK021021
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208140236|gb|GD934816.1|GD934816
EST:     CTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: CTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|208200608|gb|GD995167.1|GD995167
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCA-C--                         -CAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATTCGTAGAAAAATGTG
EST: gi|207801237|gb|GD773349.1|GD773349
EST:     GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAG                         GCA--CA-A-GACTTACAGGAATTCTGGGAC
genomic: GGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcat ... aatttttgagGCAGGCACAAGACTT-CAGGAATTCTGGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGGACCGGGGGGAAAAGATAGAGCTTCTGGTTGACAAAACTGAAAATCTTCATCACCAGgtcagttcatcattatatgtgcatctgcctgttactgcttagggtttcaaaggtcttgaacttaggaggattattctttcatgcttcaagatcattagta

- - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - GAGCTT