Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgcggtttagtgaaatgaaattcgtgttgctatgatttgtttagagg...

Basic information

species Glycine max
transcript GLYMA20G02720.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02720.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g01660.t01 (Vitis vinifera), 5'ss of exon 1
ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgcggtttagtgaaatgaaattcgtgttgctatgatttgtttagagg-
|| || || |||||||| ||||| ||||| ||| ||| |||||||||||||||||| || |||| |||||||||||  |||||  |||| || || | ||||| |||  |  |  | ||  ||   |    | |||   ||      |       | |   |       ||  ||   ||   |  | ||||   ||||  
ATTGCCTTTCAGTGCCTTCAGAAACTCCCCGCCACCAGCAACAAGTTCACCTACAATTGCGACGCCCACACCTTCACTTACCTTCTCGATAATGGCTACAgtgcgtgccttttt-ctcctttcccttcttctcttttggtttcggtttttctttactggaaaaacgtgggagtttgaagtattttaggtttggaaagagac

upper sequence: GLYMA20G02720.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ31923 (Selaginella moellendorffii), 5'ss of exon 1
ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgcggtttagtgaaatgaaattcgtgttgctatgatttgtttagagg-----------
|||||  | ||||||||||||||||| || |||  ||||||||||||||| ||||  || |||   |||||||||||||| || |||||  | ||||||||||||| ||| ||        | || |    ||| |   ||||| |   | | |||  ||   | |   |   ||||| ||  | |  |||  |     |           
ATCGCCATTCAGTGCCTCCAGAAGCTTCCCGCCAACAACAACAAGTTCACGTACACTTGCGACAAGCACACCTTCAACTATCTGGTCGAGGATGGATTCAgtgagttttttcttct-----tttgtttagttttgttcgttcgatcgatcgatcgc--ttggctcactggctgttcgtttttttttttttttctcttgtgatcttgtgtag

upper sequence: GLYMA20G02720.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37930 (Selaginella moellendorffii), 5'ss of exon 1
ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgc--ggtttagtgaa-atgaaattcgtgttgc----tatgat-ttgtttagagg
|||||  | ||||||||||||||||| || |||  ||||||||||||||| ||||  || |||   ||||| |||||||| || |||||  | ||||||||||||| ||| ||        | || |    ||| |   ||||| |   | | |||  || | | ||   ||    ||  | ||      | |||| ||||  ||   
ATCGCCATTCAGTGCCTCCAGAAGCTTCCCGCCAACAACAACAAGTTCACGTACACTTGCGACAAGCACACTTTCAACTATCTGGTCGAGGATGGATTCAgtgagttttttcttct-----tttgtttagttttgttcgttcgatcgatcgatcgcttggctcactggctattcgtttttttttatctcttgtgatcttgtgcag---

upper sequence: GLYMA20G02720.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ12280 (Selaginella moellendorffii), 5'ss of exon 1
ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgcggtttagtgaaatgaaattcgtgttgctatgatttgtttagagg
|||||  |||||||||||||||||||||| |||  ||||||||  |||||||| |  || ||  | || || ||||| ||| |  | ||  | ||||||||| |||      |  | ||  |||  |  |  |  |   ||    | |   |                                                
ATCGCTGTCCAGTGCCTCCAGAAGCTCCCCGCCAACAACAACAGATTCACCTATACTTGCGATCGTCATACTTTCAATTACTTGATTGAGGAGGGATTCAgtaagtagcatttt-ctccattcttctttagctcatgggtttttcctttgcag-----------------------------------------------

upper sequence: GLYMA20G02720.2 (Glycine max), 5'ss of exon 1
lower sequence: EFJ08162 (Selaginella moellendorffii), 5'ss of exon 1
ATCGCGTTCCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAACAAGTTCACCTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgtttcctcgcaccgatctggtggaatttttcaattcgaacatccaaacgcggtttagtgaaatgaaattcgtgttgctatgatttgtttagagg
|||||  |||||||||||||||||||||| |||  ||||||||  |||||||| |  || ||  | || || ||||| ||| |  | ||  | ||||||||| |||      |  | ||  |||  |  |  |  |   ||    | |   |                                                
ATCGCTGTCCAGTGCCTCCAGAAGCTCCCCGCCAACAACAACAGATTCACCTATACTTGCGATCGTCATACTTTCAATTACTTGATTGAGGAGGGATTCAgtaagtagcatttt-ctccattcttctttagctcatgggttttttctttgcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207811596|gb|GD783965.1|GD783965
EST:     CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGGCAACGGATTCA                         CTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
genomic: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgttt ... ttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
EST: gi|15337556|gb|BI498212.1|BI498212
EST:     CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCA                         CTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
genomic: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgttt ... ttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT