1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatgaaattcgtgttgttattatttgtttataggcttatttgaagttcggtgctgtgtttttggaaatgaatgtctgactcacacacttgttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGTGTGAAGGATGACTTTGTGGCCAAATACGGCGGCGGAAA
species | Glycine max |
transcript | GLYMA20G02720.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGGCAACGGATTCA CTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTTEST: gi|15337556|gb|BI498212.1|BI498212
genomic: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgttt ... ttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
EST: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCA CTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
genomic: CTACAACTGTGACGGCCACACCTTCAACTACCTCGTCGACAACGGATTCAgtgagtgttt ... ttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTT
ttcggtgctgtgtttttggaaatgaatgtctgactcacacacttgttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGTGTGAAGGATGACTTTGTGGCCAAATACGGCGGCGGAAA
gactcac putative branch site (score: 2)
cttgtttttt putative PPT
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaaattcgtgttgttattatttgtttataggcttatttgaagttcggtgctgtgtttttggaaatgaatgtctgactcacacacttgttttttgtagCTTATTGTGTTGTTGCGGATGAATCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGTGTGAAGGATGACTTTGTGGCCAAATACGGCGGCGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG