1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaaactcttgtcactctctcacttgtcctctctgattttgaattatgtcttatgtgttaagccagaaaaagagagaaactgatcacaagtagaatgctgggtattgaataattattgatttaaagGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCT
species | Glycine max |
transcript | GLYMA20G02550.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAG GAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAEST: gi|209700280|gb|BW664506.1|BW664506
genomic: CTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGgtaaaactct ... tgatttaaagGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAA
EST: CTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAG GAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAA
genomic: CTTCCTTGATTTCTGGTTGCAATGACTACACTCACCTCCTCTCTATTAAGgtaaaactct ... tgatttaaagGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAA
gagagaaactgatcacaagtagaatgctgggtattgaataattattgatttaaagGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCT
tattgat putative branch site (score: 3)
tattgaataattattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactcttgtcactctctcacttgtcctctctgattttgaattatgtcttatgtgttaagccagaaaaagagagaaactgatcacaagtagaatgctgggtattgaataattattgatttaaagGAGCATGTGATGAGGGAAGAGAAGCCAATTCCTACTACAAGGAAGAGTGAAGTGAAGTTTCTCAAGAGCTTGACTCGTCTTGTGGCTGCTTTTCTAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT