1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagttagtagccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGATGGATTTTTCCTGAATCGGAAACCGAGGTGCCTGGAGCTGAACCTGATA
species | Glycine max |
transcript | GLYMA20G02490.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|4260299|gb|AI416795.1|AI416795
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|151404135|gb|EV273945.1|EV273945
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|16346566|gb|BI972161.1|BI972161
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|7639431|gb|AW733754.1|AW733754
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|213588695|gb|DB957580.1|DB957580
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|209728829|gb|BW655471.1|BW655471
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|298199221|gb|HO042584.1|HO042584
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|192307448|gb|FK000776.1|FK000776
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAGCTAGAGAATCAGATGAATATAAGGGAEST: gi|7692666|gb|AW760767.1|AW760767
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|298165802|gb|HO008773.1|HO008773
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|8283063|gb|BE020624.1|BE020624
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|120491353|gb|EH219520.1|EH219520
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|9902544|gb|BE611512.1|BE611512
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGAEST: gi|298163642|gb|HO012375.1|HO012375
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
agaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGATGGATTTTTCCTGAATCGGAAACCGAGGTGCCTGGAGCTGAACCTGATA
gtttaat putative branch site (score: 4)
aatttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttagtagccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGATGGATTTTTCCTGAATCGGAAACCGAGGTGCCTGGAGCTGAACCTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA