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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCTGAGACTACCATTGCTACGCCCCAAAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttcttcaacaaacctctattttcctctcttgttttaggtatgcaataggcttgatgggaattcctgcatgttaaaatcggtagttttcatgaaa...

Basic information

species Glycine max
transcript GLYMA20G02490.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396239|gb|EV266116.1|EV266116
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         TTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... tagcatatagTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
EST: gi|4260299|gb|AI416795.1|AI416795
EST:     AAAGCACTTTTCCTCCCTCTGAGTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|151404135|gb|EV273945.1|EV273945
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|16346566|gb|BI972161.1|BI972161
EST:     CTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: CTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|213588695|gb|DB957580.1|DB957580
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         TTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... tagcatatagTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
EST: gi|209728829|gb|BW655471.1|BW655471
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         TTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... tagcatatagTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
EST: gi|192307448|gb|FK000776.1|FK000776
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|7692666|gb|AW760767.1|AW760767
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|298165802|gb|HO008773.1|HO008773
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAG                         TTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGgtatttttct ... tagcatatagTTGGAATGGCTCGATTTTCATTGGATGAGATATCAGACACTGGTGCCTTTG
EST: gi|8283063|gb|BE020624.1|BE020624
EST:     AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGATAG                      
genomic: AGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTAC---A-AGgtatttttct ... tagcata
EST: gi|120491353|gb|EH219520.1|EH219520
EST:     CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: CACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc
EST: gi|298163642|gb|HO012375.1|HO012375
EST:     AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGTACAAGCATATAG                   
genomic: AAAGCACTTTTCCTCCCTCTGACTTTTGCTACAACTACTACCAGT---A-C--A-AGgtatttttct ... tagc