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gttagtagctatttttaaccctttctagcaacagctggtacttaaatgttacatttgtttaaaaactgctgtactcagatgattgcaactgtttacttggcccttcctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAATACACTAACTGAAGCAGACATTCGTT
species | Glycine max |
transcript | GLYMA20G02490.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGTGTATAAATGTGGGTTTGCAAAGAAACAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGCGCTTTGGACANATGTGANGATATACTAAGCEST: gi|120490909|gb|EH219076.1|EH219076
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|209728830|gb|BW655472.1|BW655472
genomic: ATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|9204775|gb|BE330999.1|BE330999
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTATGGACAAATGTGAGGATATACTAAGCEST: gi|192313119|gb|FK004695.1|FK004695
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|151404135|gb|EV273945.1|EV273945
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTEST: gi|120490911|gb|EH219078.1|EH219078
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGT
EST: ATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|192307449|gb|FK000777.1|FK000777
genomic: ATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|120491353|gb|EH219520.1|EH219520
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: GGTGTTTATAAATGTGGGTTTGCAAAGAAAGCA-GAACCCATACA-TGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAA-TGTGAEST: gi|151410499|gb|EV280314.1|EV280314
genomic: GGTGTTTATAAATGTGGGTTTGCAAAGAA-GCAAGAACC-ATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGA
EST: ATGGTGTTTATAAATGTGGGTTCGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTAEST: gi|120491356|gb|EH219523.1|EH219523
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTA
EST: AATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|9902544|gb|BE611512.1|BE611512
genomic: AATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGACGCAAGAACCATACAATGAG GCTGCAAGACAAEST: gi|209728829|gb|BW655471.1|BW655471
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAA
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|192313120|gb|FK004696.1|FK004696
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCEST: gi|15201916|gb|BI425126.1|BI425126
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
EST: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAG GCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
genomic: ATGGTGTTTATAAATGTGGGTTTGCAAAGAAGCAAGAACCATACAATGAGgttagtagct ... ctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGC
aaaactgctgtactcagatgattgcaactgtttacttggcccttcctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAATACACTAACTGAAGCAGACATTCGTT
tttacttggcccttcc CT-rich tract
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagctatttttaaccctttctagcaacagctggtacttaaatgttacatttgtttaaaaactgctgtactcagatgattgcaactgtttacttggcccttcctttttccagGCTGCAAGACAATTGTACGGGGCTTTGGACAAATGTGAGGATATACTAAGCAAGCAACGCTATATATGTGGCAATACACTAACTGAAGCAGACATTCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC