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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagtagccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacag

Basic information

species Glycine max
transcript GLYMA20G02490.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02490.3 (Glycine max), 5'ss of exon 2
lower sequence: AT4G19880.2 (Arabidopsis thaliana), 5'ss of exon 2
AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt--agccttc--atgctgaatatttttcaagtagaatagttgc-ttagttcatcgcccaatttcatatgccgcgtgtttaatgaacag---
 || || || ||||| ||  |||| ||||||||||| |||||||| || |||||| | ||||| || ||||||||||||||| | || || || ||||||||  ||      | || |   |  |||  |||| || | |||||||  |  | ||   | || |      |  |  ||     ||||| ||   ||    
TGGTAGATACCATCTTTACATATCGTATGCTTGTCCATGGGCTTCTAGATGCCTTTCATACTTAAAGATCAAAGGACTTGACGATGCAATAAGCTTCTCGgtgcgtagactcaaccctttaacactgcttattgtt-atgtagaatcataccatttcctgatggtattgatcgaattgttctttgtttgatttccatcag

upper sequence: GLYMA20G02490.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G44990.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagtagccttcatgctgaat--atttttcaagtagaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacag
||| || || ||||| ||| | || ||||||||||| |||||||| || || |||||   ||||||  ||||||||||||||||||| || || || ||||||||| |  |     |||   |  |  ||||||  || | |  |  || | ||||  |     |                             
AGGAAGATACCATCTTTATATCTCTTATGCTTGTCCATGGGCTTCTAGATGTCTTGCAATCTTGAAACTCAAAGGACTTGACAAAGCTATAAGCTTTTCGgttagtaaagacgacacatttagtttcgatttttacagaacataatctgatcagtttgttcattag----------------------------

upper sequence: GLYMA20G02490.3 (Glycine max), 5'ss of exon 2
lower sequence: AT5G45020.2 (Arabidopsis thaliana), 5'ss of exon 2
AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagtagccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcatatgccgcgtgtttaatgaacag
||| || || ||||| ||  |||| ||||||||||| |||||||  || || ||| ||||||| || ||||||||||||||  |||| ||||  ||||||||||||    |   |   |||| |    | |  || ||||| | ||  |||       ||   ||||| | |      || ||  |||  ||
AGGAAGATACCATCTTTACATATCTTATGCTTGTCCATGGGCTTGTAGATGTCTTTCTTACTTAAAGATCAAAGGACTTGATGAAGCAATCACCTTCTCGgttagt--acaaattcattgctca----tatcgaattagaagactttgttaacctgaagc---atttc-tgttttatttgatt--tgattag

upper sequence: GLYMA20G02490.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g01890.t01 (Vitis vinifera), 5'ss of exon 3
AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagtagccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcat-atgccgcgtgtttaatgaacag----
 || ||||||||||| ||| |||||||||| ||||| ||||| | |||||||||| | |||||||| ||||||||||||||||| | |||   |||| |||| | |||        ||| || ||  | ||  |  |||| |  |   ||   ||||  |  |||| ||| |  | | || || |      |     
TGGAAGGTATCATCTTTATATATCATATGCATGTCCCTGGGCATGCAGGTGCCTTTCATACTTGAAGATCAAAGGACTTGACAACGTCATTGCTTTCACGgtaaatta--------catcctaaagttcttatagttagattcat--attg--tcataactgaattacatgaaactgtgtattcatctcttactcag

upper sequence: GLYMA20G02490.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g01900.t01 (Vitis vinifera), 5'ss of exon 3
AGGGAGGTATCATCTCTATGTATCATATGCTTGTCCTTGGGCTTCCAGGTGCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt--agccttcatgctgaatatttttcaagtagaatagttgcttagttcatcgcccaatttcata--tgccgcgtgtttaatgaacag
 || || || ||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||| | |||||  |  | |  | ||   ||  ||  || |   |||   |   |    | | || ||||  ||   ||       |||  |   |||
TGGAAGATACCATCTGTATGTATCATATGCCTGTCCTTGGGCATCCAGGTGCCTTGCCTACTTGAAGATCAAAGGACTTGACAAAGCCATCAGTTTTACGgtaaattagttaatacgttcttctaggtagattcaaattgttataa--gaaaaaaataccaccaaattgaatcgttggttttcattttctactcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199221|gb|HO042584.1|HO042584
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|7639431|gb|AW733754.1|AW733754
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|16346566|gb|BI972161.1|BI972161
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|298180557|gb|HO025644.1|HO025644
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|151404135|gb|EV273945.1|EV273945
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|120491353|gb|EH219520.1|EH219520
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|151410499|gb|EV280314.1|EV280314
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|9902544|gb|BE611512.1|BE611512
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|209728829|gb|BW655471.1|BW655471
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
EST: gi|8283063|gb|BE020624.1|BE020624
EST:     GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCG                         GCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA
genomic: GCCTTGCTTACTTGAATATCAAAGGACTTGACAAAGCCATCAGTTTCTCGgttagttagt ... taatgaacagGCTGTCAAACCCATCTTTGAGAGAACTAGAGAATCAGATGAATATAAGGGA