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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaatgtgaaaagaactctttgctttaagtgattaagttgttgacttttagttatccctctaacatgccttcttggcttcttctatgttgtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATGGAAATTACGCAACCATCGGCATAACTGATCATGCCCAAGATCATTTGGG

Basic information

species Glycine max
transcript GLYMA20G02400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400106|gb|EV269920.1|EV269920
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|298172989|gb|HO019988.1|HO019988
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192326070|gb|FK016927.1|FK016927
EST:     TCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: TCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|151405564|gb|EV275378.1|EV275378
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|254339057|gb|GR847774.1|GR847774
EST:     GCTGCCTCTTACCTGAGGATCTCTGTGTTTCACATGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: GCTGCCTCTTACCTGAGGATCTCTGTGTTTCACA-GAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|298167264|gb|HO010703.1|HO010703
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192298097|gb|FG991377.1|FG991377
EST:     AGCTGCCTCTTACCCGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192322471|gb|FK014952.1|FK014952
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|298199559|gb|HO042922.1|HO042922
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTCTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192313870|gb|FK010318.1|FK010318
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|58024463|gb|CX711204.1|CX711204
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|151398786|gb|EV268657.1|EV268657
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192324559|gb|FK018715.1|FK018715
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|15814016|gb|BI786291.1|BI786291
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192300233|gb|FG989355.1|FG989355
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|7042399|gb|AW472293.1|AW472293
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|19269010|gb|BM885266.1|BM885266
EST:     CTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: CTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|9819482|gb|BE554995.1|BE554995
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192331684|gb|FK023473.1|FK023473
EST:     AGCTGCCTCTTACCTGAGGATCTCGGTGTTTCACAGAGGCTTTTCTAGTG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|58023632|gb|CX710373.1|CX710373
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192330275|gb|FK019855.1|FK019855
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|193610428|gb|FK566216.1|FK566216
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192313871|gb|FK010319.1|FK010319
EST:     GTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: GTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192325129|gb|FK019075.1|FK019075
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192298495|gb|FG988481.1|FG988481
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|192328783|gb|FK022555.1|FK022555
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|151397019|gb|EV266892.1|EV266892
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
EST: gi|151413198|gb|EV283006.1|EV283006
EST:     AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATG                         TTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG
genomic: AGCTGCCTCTTACCTGAGGATCTCTGTGTTTCACAGAGGCTTTTCTAATGgtagcatctc ... gtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttagttatccctctaacatgccttcttggcttcttctatgttgtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATGGAAATTACGCAACCATCGGCATAACTGATCATGCCCAAGATCATTTGGG
             ctctaac  putative branch site (score: 2)
                                              tacctcc  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caaaatgtgaaaagaactctttgctttaagtgattaagttgttgacttttagttatccctctaacatgccttcttggcttcttctatgttgtacctccagTTATTAAAGATTTCAAGTATGTTGATTCTCATGAGTGGGTGAAAGTTGATGGAAATTACGCAACCATCGGCATAACTGATCATGCCCAAGATCATTTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -aaaagaa
- - - - - - - - - - -tgcttta
- - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctct