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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCGATGTTACGAGCAAGGATCTCTACAGTTCTGACCCTACTGTGAGTCCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttcttcaaccttttttttaaggaaaacctacttttttttttaaatgggtttttgtcgatttcaaccgggtatttggttttttcaaatgggtcgt...

Basic information

species Glycine max
transcript GLYMA20G02360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02360.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G15400.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCTCGATGTTACGAGCAAGGATCTCTACAGTTCTGACCCTACTGTGAGTCCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttcttcaaccttttttttaaggaaaacctacttttt---------------tttttaaa--tgggtttttgtcgatttcaaccgggtatttggttttttcaaatgggtcgt---------------------------------------------------------------------------
|||| |||||||| || | ||||||||||||| |||| |||||||| | ||| ||||||||| ||     |||  | |||       ||  | |  ||| ||  ||  |||    | |  || ||  ||  |  |  | |||               ||  |||   | | | ||   | ||   || |    |||||   | || | |||     |                                                                           
CCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCACAAgtaagtcccttt--tcatcattgtagtgattatttgttctttatgaattgattggaattgctaagcttagatattacacaatgctaaacaaa-atttgacatctttagatgccctttgcatgagtcttccttttggtagttctgtggcttttttttctgcagtttcttagactgttattgttttggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208102102|gb|GD899083.1|GD899083
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAGGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
EST: gi|193649683|gb|FK596246.1|FK596246
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAG
EST: gi|193541602|gb|FK498360.1|FK498360
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
EST: gi|208055814|gb|GD849811.1|GD849811
EST:     CTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
genomic: CTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
EST: gi|254315327|gb|GR825136.1|GR825136
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACA-CA-CAG                         AGGGATTATCATTGTGAAGT
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGT
EST: gi|13790386|gb|BG652977.1|BG652977
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
EST: gi|193418971|gb|FK382257.1|FK382257
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAG
EST: gi|120531834|gb|EH259967.1|EH259967
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTGAAGCTGAGAGC
EST: gi|193640338|gb|FK589335.1|FK589335
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTG
EST: gi|193687337|gb|FK633938.1|FK633938
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAGTTGAGACGCGGACAAGAGCTG
EST: gi|193539708|gb|FK495192.1|FK495192
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTGAAG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTGAAG
EST: gi|193560566|gb|FK517241.1|FK517241
EST:     CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAG                         AGGGATTATCATTGTG
genomic: CCCGTTGATTTCTCTGACCCCTCTGCCACTGACTCCCCAGACAACAACAGgtgcgtttct ... gtgtattcagAGGGATTATCATTGTG